RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZNF470Q6ECI4 717 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 LRRC8EQ6NSJ5 796 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 ABI3BPQ7Z7G0 1075 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 HEATR4Q86WZ0 1026 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 DENND6AQ8IWF6 608 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PIANPQ8IYJ0 282 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 MFSD2AQ8NA29 543 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 FAM13CQ8NE31 585 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 CFAP61Q8NHU2 1237 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PIGKQ92643 395 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 GLYATL1Q969I3 302 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 TSPAN17Q96FV3 270 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 KLHDC7BQ96G42 594 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PRR11Q96HE9 360 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 HIC2Q96JB3 615 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 LGR4Q9BXB1 951 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 WDR26Q9H7D7 661 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 TAGLN3Q9UI15 199 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PILRBQ9UKJ0 227 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 LRRK1Q38SD2 2015 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 AGAP14A8MT82 685 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 A8MUI8 341 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 GSC2O15499 205 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 HSPA4LO95757 839 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 GNSP15586 552 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 SLC12A2P55011 1212 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 YPEL5P62699 121 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 CDK3Q00526 305 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 PSAPL1Q6NUJ1 521 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 SYT12Q8IV01 421 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 CENPLQ8N0S6 344 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 PNPLA1Q8N8W4 532 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 FAM174AQ8TBP5 190 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 AGAP11Q8TF27 550 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 FUBP1Q96AE4 644 aaKnown RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 ELMO2Q96JJ3 720 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 VPS35Q96QK1 796 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 MIPEPQ99797 713 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 CADM1Q9BY67 442 aaKnown RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 KCNH6Q9H252 994 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 PHPT1Q9NRX4 125 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 CATSPERZQ9NTU4 200 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 MARCH4Q9P2E8 410 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 CRLS1Q9UJA2 301 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 RAB23Q9ULC3 237 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 RUVBL2Q9Y230 463 aaKnown RBP13.21□□□□□ -0.29
LIMS1-204ENST00000409441 THADAQ6YHU6 1953 aa13.21□□□□□ -0.29
LIMS1-204ENST00000409441 TRBV5-4A0A0C4DH59 114 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 A0A1W2PR77 199 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 TARM1B6A8C7 271 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 CACNB4O00305 520 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF195O14628 629 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 TOR1BO14657 336 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 PHGDHO43175 533 aaKnown RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 LMNAP02545 664 aaKnown RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 WNT1P04628 370 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 F7P08709 466 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 HOXC4P09017 264 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 EZRP15311 586 aaKnown RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 GMPRP36959 345 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 RABIFP47224 123 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 CSNK1EP49674 416 aaKnown RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 AFF3P51826 1226 aaKnown RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 SEMA3AQ14563 771 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 WLSQ5T9L3 541 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 MRNIPQ6NTE8 343 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 SDCCAG8Q86SQ7 713 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 LDB1Q86U70 411 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 SERPINA9Q86WD7 417 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 NXPE1Q8N323 547 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 TMEM151AQ8N4L1 468 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 TEX9Q8N6V9 391 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 OR13H1Q8NG92 308 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 GPR150Q8NGU9 434 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 ULK4Q96C45 1275 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 COX14Q96I36 57 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 LOXL4Q96JB6 756 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 SCYL1Q96KG9 808 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 EBF4Q9BQW3 602 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 GATA5Q9BWX5 397 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 DRC3Q9H069 523 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 PNPOQ9NVS9 261 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 SMOXQ9NWM0 555 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 TAS2R1Q9NYW7 299 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 CORO1CQ9ULV4 474 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-204ENST00000409441 RAP2CQ9Y3L5 183 aa13.21□□□□□ -0.3
LIMS1-204ENST00000409441 CACNA1HO95180 2353 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 A0A1B0GTW7 788 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 PRR5-ARHGAP8B1AHC4 643 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 SLCO1B7G3V0H7 640 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TLR4O00206 839 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 THEGLP0DJG4 465 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 MYCLP1P12525 358 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 SAT1P21673 171 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 PMLP29590 882 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 ARRB2P32121 409 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 SERPINB5P36952 375 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 IDH3AP50213 366 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 THOP1P52888 689 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms