RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PRMT3O60678 531 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 OR6A2O95222 327 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 PBLDP30039 288 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC5A3P53794 718 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ATP12AP54707 1039 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF181Q2M3W8 571 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GET4Q7L5D6 327 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GATAD2AQ86YP4 633 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZDHHC6Q9H6R6 413 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 SP140LQ9H930 580 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ITM2CQ9NQX7 267 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 MRPL17Q9NRX2 175 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 TRIM17Q9Y577 477 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDHGB6Q9Y5F9 930 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 INSIG1O15503 277 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 KLF1Q13351 362 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 CXorf40AQ8TE69 158 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 YIPF2Q9BWQ6 316 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 C1QTNF1Q9BXJ1 281 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF222Q9UK12 451 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 HEBP2Q9Y5Z4 205 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GLDCP23378 1020 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF614Q8N883 585 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 LRTOMTQ8WZ04 291 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ADAM2Q99965 735 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 COQ10BQ9H8M1 238 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 SGK2Q9HBY8 427 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 KHKP50053 298 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ATN1P54259 1190 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 MPPE1Q53F39 396 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ADNP2Q6IQ32 1131 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 FBXO42Q6P3S6 717 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 UBE2R2Q712K3 238 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM20CQ8IXL6 584 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 FZD8Q9H461 694 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 WDR55Q9H6Y2 383 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GDAP2Q9NXN4 497 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 WASF2Q9Y6W5 498 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 TSPAN1O60635 241 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ABCB7O75027 752 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC35G4P0C7Q5 338 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TM4SF1P30408 202 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SP140Q13342 867 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TRAM1Q15629 374 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF513Q8N8E2 541 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 AP2M1Q96CW1 435 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TTPALQ9BTX7 342 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TMEM106CQ9BVX2 250 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 DHRS7Q9Y394 339 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SMIM28A0A1B0GU29 152 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 BHMG1C9JSJ3 638 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 MAGEB3O15480 346 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ELFN1P0C7U0 828 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC1A2P43004 574 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 VWA5B1Q5TIE3 1220 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 IL23RQ5VWK5 629 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ADGRD2Q7Z7M1 963 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 OR8J3Q8NGG0 315 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC38A4Q969I6 547 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 MND1Q9BWT6 205 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 MMP27Q9H306 513 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 A0A1W2PQ72 361 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 HTR1BP28222 390 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 IFI44LQ53G44 452 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 RFWD3Q6PCD5 774 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TTC29Q8NA56 475 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ZBED6CLQ96FA7 236 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SCN4AP35499 1836 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TEX46H3BTG2 121 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDH8O95206 1070 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 BUD31P41223 144 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 LILRA4P59901 499 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 PAFAH1B3Q15102 231 aaKnown RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 RHBDF2Q6PJF5 856 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 AHSA2Q719I0 299 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 KRT77Q7Z794 578 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 GALNT13Q8IUC8 556 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 GPALPP1Q8IXQ4 340 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 CREB3L1Q96BA8 519 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 DERL2Q9GZP9 239 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 IPPKQ9H8X2 491 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 PRDM5Q9NQX1 630 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A9O60656 530 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ADH1AP07327 375 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A6P19224 532 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A1P22309 533 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A4P22310 534 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A3P35503 534 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 RALGDSQ12967 914 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 HSDL1Q3SXM5 330 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 GPR158Q5T848 1215 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF730Q6ZMV8 503 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 REM2Q8IYK8 340 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 OR4K2Q8NGD2 314 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A7Q9HAW7 530 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A10Q9HAW8 530 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 UGT1A8Q9HAW9 530 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDH12Q9NPG4 1184 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 AASSQ9UDR5 926 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 CPSF6Q16630 551 aaKnown RBP eCLIP10.15□□□□□ -0.781e-7■■■■■ 28.7
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms