RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CXCR5P32302 372 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 PRLHRP49683 370 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 MAPK10P53779 464 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 SRSF1Q07955 248 aaKnown RBP eCLIP14.81□□□□□ -0.04
TRIM28-205ENST00000595028 CLCA4Q14CN2 919 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 ZRANB3Q5FWF4 1079 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 PPP1R21Q6ZMI0 780 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 MICALCLQ6ZW33 695 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 RBM12BQ8IXT5 1001 aaKnown RBP14.81□□□□□ -0.04
TRIM28-205ENST00000595028 DNAAF3Q8N9W5 541 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 AGBL5Q8NDL9 886 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 GPR150Q8NGU9 434 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 CXorf40BQ96DE9 158 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 LINC00615Q96LM1 132 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-205ENST00000595028 ZDHHC3Q9NYG2 299 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 DRG1Q9Y295 367 aaKnown RBP14.81□□□□□ -0.04
TRIM28-205ENST00000595028 SDK2Q58EX2 2172 aa14.81□□□□□ -0.04
TRIM28-205ENST00000595028 IGLV3-16A0A075B6K0 115 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 PRAMEF33A0A0G2JMD5 474 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CCDC78A2IDD5 438 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 KLHL33A6NCF5 533 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 B8ZZF3 427 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 KLK10O43240 276 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 PRAMEF10O60809 474 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 WISP1O95388 367 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 GAS8O95995 478 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 APRTP07741 180 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 ZSCAN5DPP0CG00 497 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 PRSS56P0CW18 603 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CCL4P13236 92 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CSTF2P33240 577 aaKnown RBP eCLIP14.8□□□□□ -0.04
TRIM28-205ENST00000595028 RPL22P35268 128 aaKnown RBP14.8□□□□□ -0.04
TRIM28-205ENST00000595028 GRIA1P42261 906 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CAPZBP47756 277 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CDKN1CP49918 316 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-205ENST00000595028 ARSDP51689 593 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CACNG1Q06432 222 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 GPR18Q14330 331 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CCDC38Q502W7 563 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 METRNLQ641Q3 311 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 XKR5Q6UX68 686 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 SERPINA9Q86WD7 417 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 OR2L2Q8NH16 312 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 HM13Q8TCT9 377 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 NCSTNQ92542 709 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 USP7Q93009 1102 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CDKN2AIPNLQ96HQ2 116 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 RANBP9Q96S59 729 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 B3GNT4Q9C0J1 378 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 KCNF1Q9H3M0 494 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 SLC40A1Q9NP59 571 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 CASS4Q9NQ75 786 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 EIF2B3Q9NR50 452 aaKnown RBP14.8□□□□□ -0.04
TRIM28-205ENST00000595028 OGFRQ9NZT2 677 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 FOXJ2Q9P0K8 574 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 FAM8A1Q9UBU6 413 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 PSMD13Q9UNM6 376 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 JRKLQ9Y4A0 524 aa14.8□□□□□ -0.04
TRIM28-205ENST00000595028 USP9XQ93008 2570 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-205ENST00000595028 HEATR9A2RTY3 570 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 C9orf172C9J069 976 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 UBXN7O94888 489 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 MSNP26038 577 aaKnown RBP14.79□□□□□ -0.04
TRIM28-205ENST00000595028 UCNP55089 124 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 GFERP55789 205 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 CLN3Q13286 438 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 RPE65Q16518 533 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 DBN1Q16643 649 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 SKIDA1Q1XH10 827 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 SNAP47Q5SQN1 464 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 BROXQ5VW32 411 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 GSTA5Q7RTV2 222 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 ARHGAP22Q7Z5H3 698 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 PLXDC1Q8IUK5 500 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 REXO1L1PQ8IX06 675 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 PIANPQ8IYJ0 282 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 PRELID2Q8N945 189 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 OR13J1Q8NGT2 312 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 RSC1A1Q92681 617 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 PMEPA1Q969W9 287 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 WBP1Q96G27 269 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 HOMER3Q9NSC5 361 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 RIMKLBQ9ULI2 386 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 SSUH2Q9Y2M2 353 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 PCDHGA3Q9Y5H0 932 aa14.79□□□□□ -0.04
TRIM28-205ENST00000595028 CCDC162PA2VCL2 907 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 B4E171 279 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 ZSCAN12O43309 604 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 C9P02748 559 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 ANKRD34CP0C6C1 535 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 SLC35G4P0C7Q5 338 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 LIPCP11150 499 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 FGF3P11487 239 aaPredicted RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 MTHFD1P11586 935 aaKnown RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 ATP1B2P14415 290 aaPredicted RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 TYRP1P17643 537 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 CD82P27701 267 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 FOXN2P32314 431 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 TSPAN7P41732 249 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 KCNJ1P48048 391 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms