RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SYN3O14994 580 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PER2O15055 1255 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC22A2O15244 555 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TM9SF1O15321 606 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC16A6O15403 523 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 KRT86O43790 486 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 EXOC3O60645 756 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MAGEC1O60732 1142 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PRAMEF10O60809 474 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NBNO60934 754 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 OR7A10O76100 309 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PSMG1O95456 288 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 WDPCPO95876 746 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 DHFRP00374 187 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ANXA1P04083 346 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HRGP04196 525 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 A1BGP04217 495 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TFAP2AP05549 437 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 POLBP06746 335 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 POU2F2P09086 479 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HBQ1P09105 142 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 GLI2P10070 1586 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ANXA8P13928 327 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ENO3P13929 434 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 IFNAR1P17181 557 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TYRP1P17643 537 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CAPN3P20807 821 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CHMP24386 653 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MARK3P27448 753 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 GDI1P31150 447 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ARL1P40616 181 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 ETV5P41161 510 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NAMPTP43490 491 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 GSTM5P46439 218 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 RASSF2P50749 326 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 RENBPP51606 427 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MAP2K6P52564 334 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC7A2P52569 658 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ATP12AP54707 1039 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PSMD4P55036 377 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 NR1H2P55055 460 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC26A5P58743 744 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SPCS3P61009 180 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HNRNPKP61978 463 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS35-208ENST00000568612 RPP30P78346 268 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 CDK16Q00536 496 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FLI1Q01543 452 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 COL10A1Q03692 680 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ABRQ12979 859 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PRKG2Q13237 762 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TFDP1Q14186 410 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CAPRIN1Q14444 709 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 CLCA4Q14CN2 919 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TTF1Q15361 905 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 ITSN1Q15811 1721 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 DPYSL2Q16555 572 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HADHQ16836 314 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 PFKFB4Q16877 469 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 LRRC36Q1X8D7 754 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 AAK1Q2M2I8 961 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SPHKAPQ2M3C7 1700 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SMTNL2Q2TAL5 461 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 IQCCQ4KMZ1 466 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TEX30Q5JUR7 227 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PDSS1Q5T2R2 415 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ATAD3BQ5T9A4 648 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HES5Q5TA89 166 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ANXA8L1Q5VT79 327 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 KRT79Q5XKE5 535 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 IL31Q6EBC2 164 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CASC4Q6P4E1 433 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FUT10Q6P4F1 479 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CYP20A1Q6UW02 462 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 UGT2A3Q6UWM9 527 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ARSKQ6UWY0 536 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 LDHAL6AQ6ZMR3 332 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 RFX8Q6ZV50 586 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 RAB11FIP2Q7L804 512 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HAUS6Q7Z4H7 955 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ADGRG6Q86SQ4 1221 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ZNF589Q86UQ0 364 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 ZNF410Q86VK4 478 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FJX1Q86VR8 437 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CDKL3Q8IVW4 592 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 MICU2Q8IYU8 434 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 RCOR2Q8IZ40 523 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NRSN1Q8IZ57 195 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 KIAA0319LQ8IZA0 1049 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ARL14Q8N4G2 192 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 METTL25Q8N6Q8 603 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PLD5Q8N7P1 536 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FNDC5Q8NAU1 212 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 AVL9Q8NBF6 648 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 B3GALNT2Q8NCR0 500 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 IL17REQ8NFR9 667 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 OR56B2PQ8NGI1 322 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 OR6Y1Q8NGX8 325 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC30A5Q8TAD4 765 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SPPL3Q8TCT6 385 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PPP4R1Q8TF05 950 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms