RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 LINC00299Q6ZSB3 139 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 KLHDC8BQ8IXV7 354 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 CELF2-AS1Q8N7Q2 184 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 FAM162AQ96A26 154 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TBATAQ96M53 351 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 THUMPD3Q9BV44 507 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 ZBTB20Q9HC78 741 aaPredicted RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 SMPD4Q9NXE4 827 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 RNF112Q9ULX5 631 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 UBQLN1Q9UMX0 589 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 PCDHB14Q9Y5E9 798 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 EFCAB9A8MZ26 197 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TNPO2O14787 897 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 DFNA5O60443 496 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 VPS4BO75351 444 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 NDST3O95803 873 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 CD36P16671 472 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 HOXA11P31270 313 aaPredicted RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 GRK3P35626 688 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 PRKG2Q13237 762 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 PPP2R2DQ66LE6 453 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 LBX2Q6XYB7 198 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 NECAB2Q7Z6G3 386 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TAC4Q86UU9 113 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 SVOPQ8N4V2 548 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 OR2T12Q8NG77 320 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 KCTD13Q8WZ19 329 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 NCLNQ969V3 563 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 ZNF583Q96ND8 569 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 CDK15Q96Q40 435 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TMEM209Q96SK2 561 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 ATOH8Q96SQ7 321 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 DCSTAMPQ9H295 470 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 DDX28Q9NUL7 540 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 H0Y626 953 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TAF4O00268 1085 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TRIM16O95361 564 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 LCKP06239 509 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 CCDC159P0C7I6 412 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 DBTP11182 482 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 CXCR2P25025 360 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 DCTP40126 519 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 CLK1P49759 484 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 RACK1P63244 317 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 FXNQ16595 210 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 ANKS6Q68DC2 871 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 C14orf80Q86SX3 495 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 DCP2Q8IU60 420 aaKnown RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 MICU2Q8IYU8 434 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 ZNF540Q8NDQ6 660 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 PROX1Q92786 737 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 SPATC1LQ9H0A9 340 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 NT5MQ9NPB1 228 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 IKZF3Q9UKT9 509 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 FAM50BQ9Y247 325 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 SPO11Q9Y5K1 396 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 TIMM13Q9Y5L4 95 aaPredicted RBP16.28■□□□□ 0.2
TPM1-228ENST00000560975 ORC6Q9Y5N6 252 aa16.28■□□□□ 0.2
TPM1-228ENST00000560975 SMIM28A0A1B0GU29 152 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 A0A1W2PQ67 120 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 CYP11A1P05108 521 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 LGALS2P05162 132 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 PRSS56P0CW18 603 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 CD86P42081 329 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 TIAL1Q01085 375 aaKnown RBP eCLIP16.27■□□□□ 0.29e-7■■■□□ 18.9
TPM1-228ENST00000560975 DCAF4L1Q3SXM0 396 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 C6orf136Q5SQH8 315 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 CCBE1Q6UXH8 406 aaPredicted RBP16.27■□□□□ 0.2
TPM1-228ENST00000560975 ZFAND4Q86XD8 727 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 GATAD2AQ86YP4 633 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 EID3Q8N140 333 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 CDYL2Q8N8U2 506 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 SMOQ99835 787 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 RNF39Q9H2S5 420 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 ZNF225Q9UK10 706 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 DERAQ9Y315 318 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 MCM3APO60318 1980 aa16.27■□□□□ 0.2
TPM1-228ENST00000560975 HOXC11O43248 304 aaPredicted RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 PRR35P0CG20 571 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 ZNF37AP17032 561 aaPredicted RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 CCR1P32246 355 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 TSNQ15631 228 aaKnown RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 PM20D1Q6GTS8 502 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 RIOX2Q8IUF8 465 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 LACC1Q8IV20 430 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 PYCR2Q96C36 320 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 CLIP3Q96DZ5 547 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 ZNF560Q96MR9 790 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 CDK5RAP1Q96SZ6 601 aaKnown RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 KAT8Q9H7Z6 458 aaKnown RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 MPP6Q9NZW5 540 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 GALPQ9UBC7 116 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 OPTCQ9UBM4 332 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 TMEFF2Q9UIK5 374 aaPredicted RBP16.27■□□□□ 0.19
TPM1-228ENST00000560975 BOLA1Q9Y3E2 137 aa16.27■□□□□ 0.19
TPM1-228ENST00000560975 TSC2P49815 1807 aa16.26■□□□□ 0.19
TPM1-228ENST00000560975 A8MV72 311 aaPredicted RBP16.26■□□□□ 0.19
TPM1-228ENST00000560975 RGS13O14921 159 aa16.26■□□□□ 0.19
TPM1-228ENST00000560975 SSX4O60224 188 aa16.26■□□□□ 0.19
TPM1-228ENST00000560975 PGLSO95336 258 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms