RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ANKDD1BA6NHY2 528 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 C5orf67F2Z3F1 127 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 AGPSO00116 658 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 DCXO43602 365 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 H2AFYO75367 372 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ADH1BP00325 375 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 IGLV3-25P01717 112 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MPOP05164 745 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CHRNGP07510 517 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MYF5P13349 255 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NDUFV2P19404 249 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 OPRD1P41143 372 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 PTGER3P43115 390 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 AGTR2P50052 363 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 RPS21P63220 83 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 HYAL2Q12891 473 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TCEAL1Q15170 157 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MPP7Q5T2T1 576 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 KDELC1Q6UW63 502 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CERS6Q6ZMG9 384 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 Q6ZSR6 202 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MTDHQ86UE4 582 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 LRRTM4Q86VH4 590 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZC3HC1Q86WB0 502 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 IL17RCQ8NAC3 791 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 DOK4Q8TEW6 326 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF473Q8WTR7 871 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ELSPBP1Q96BH3 223 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CEP295NLQ96MC4 621 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF641Q96N77 438 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 FAM83CQ9BQN1 747 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 FAM129AQ9BZQ8 928 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 C6orf106Q9H6K1 298 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NOL11Q9H8H0 719 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 FSCN3Q9NQT6 498 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TM7SF3Q9NS93 570 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 KCTD5Q9NXV2 234 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZDHHC3Q9NYG2 299 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 APOBEC3BQ9UH17 382 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CDYLQ9Y232 598 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 A0A0J9YVX5 310 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MYOCOSA0A1B0GUC4 107 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 FAM92AA1XBS5 289 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 POM121BA6NF01 834 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CAPN8A6NHC0 703 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM233B4DJY2 109 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NR5A2O00482 541 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TXNDC9O14530 226 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 GSTA4O15217 222 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TPST1O60507 370 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SOCS5O75159 536 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 LATS1O95835 1130 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 POLR2CP19387 275 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 C5AR1P21730 350 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 LHCGRP22888 699 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TARSP26639 723 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 HMGCLP35914 325 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NEK2P51955 445 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 STC1P52823 247 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NRG1Q02297 640 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF33AQ06730 810 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SLC9A5Q14940 896 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TSNAXIP1Q2TAA8 658 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 C18orf21Q32NC0 220 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 FBXO43Q4G163 708 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 KBTBD6Q86V97 674 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 C11orf74Q86VG3 221 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CEP97Q8IW35 865 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SCML4Q8N228 414 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 TSSK3Q96PN8 268 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MIPEPQ99797 713 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ZSCAN5AQ9BUG6 496 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 WWP1Q9H0M0 922 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 PARVBQ9HBI1 364 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 GIMAP2Q9UG22 337 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SLC22A14Q9Y267 594 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SLC27A6Q9Y2P4 619 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 UNC13CQ8NB66 2214 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 RP1P56715 2156 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MGAT4DA6NG13 374 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 H3BMM5 538 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 GYG2O15488 501 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 MAGEC1O60732 1142 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 OR4F21O95013 312 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ESR1P03372 595 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SRPRAP08240 638 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 NUDT17P0C025 328 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SRFP11831 508 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ALOX15P16050 662 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CNTFP26441 200 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 ARRB1P49407 418 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 RPL38P63173 70 aaKnown RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 HTR4Q13639 388 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 SIM2Q14190 667 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-209ENST00000560637 AGKQ53H12 422 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 PRSS36Q5K4E3 855 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 PHF19Q5T6S3 580 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 PPP4R4Q6NUP7 873 aa5.36□□□□□ -1.55
VPS13C-209ENST00000560637 CDHR3Q6ZTQ4 885 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms