RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CARS2Q9HA77 564 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SYTL2Q9HCH5 934 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PCDH12Q9NPG4 1184 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 HACL1Q9UJ83 578 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 DNAJC25-GNG10A0A024R161 153 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SMIM28A0A1B0GU29 152 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 METTL15A6NJ78 407 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ASB14A6NK59 587 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 TNFRSF10AO00220 468 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 GNGT2O14610 69 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 HS6ST1O60243 411 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 NOBOXO60393 691 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SNX4O95219 450 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SLC25A27O95847 323 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 EGFRP00533 1210 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 IGLV3-25P01717 112 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SLC2A3P11169 496 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 OGNP20774 298 aaKnown RBP9.55□□□□□ -0.88
SYNE1-230ENST00000495090 NRIP1P48552 1158 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 MASP1P48740 699 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 FCGRTP55899 365 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 LILRA4P59901 499 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 NCS1P62166 190 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 CDC42EP1Q00587 391 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 VAC14Q08AM6 782 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SLC13A2Q13183 592 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 EIF4EBP2Q13542 120 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-230ENST00000495090 NKG7Q16617 165 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ATP6AP1LQ52LC2 224 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 BRMS1LQ5PSV4 323 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 C6orf136Q5SQH8 315 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 STEAP3Q658P3 488 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 MRNIPQ6NTE8 343 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF549Q6P9A3 640 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 TTC23LQ6PF05 361 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 TAC4Q86UU9 113 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 POC5Q8NA72 575 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 IPCEF1Q8WWN9 437 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-230ENST00000495090 COPS5Q92905 334 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 RHBDF1Q96CC6 855 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 PABPC5Q96DU9 382 aaKnown RBP9.55□□□□□ -0.88
SYNE1-230ENST00000495090 KLRG1Q96E93 195 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ZHX1-C8orf76Q96EF9 292 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SMOQ99835 787 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 NOL6Q9H6R4 1146 aaKnown RBP9.55□□□□□ -0.88
SYNE1-230ENST00000495090 LTB4R2Q9NPC1 389 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ACOT13Q9NPJ3 140 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ABCB10Q9NRK6 738 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 ERVK-18Q9QC07 812 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 OPTCQ9UBM4 332 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 SLCO3A1Q9UIG8 710 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 PTCH2Q9Y6C5 1203 aa9.55□□□□□ -0.88
SYNE1-230ENST00000495090 A0A1B0GTL3 188 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 LCHNA4D1U4 455 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 EVPLLA8MZ36 301 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SUPT3HB4E1H0 165 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 GSTA4O15217 222 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RGS10O43665 173 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 XPNPEP2O43895 674 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FKBP9O95302 570 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 USP17L7P0C7H9 530 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 PSMB9P28065 219 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SOX11P35716 441 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 TGFBR2P37173 567 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 KRT6CP48668 564 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 IST1P53990 364 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 MTPNP58546 118 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 IL5RAQ01344 420 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ARHGAP1Q07960 439 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RAPSNQ13702 412 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 UBE2UQ5VVX9 321 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SHQ1Q6PI26 577 aaKnown RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ENPP6Q6UWR7 440 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 GPR149Q86SP6 731 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SYVN1Q86TM6 617 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SPNS2Q8IVW8 549 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FBXO16Q8IX29 292 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FAM126BQ8IXS8 530 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FAM86B1Q8N7N1 296 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 FNDC5Q8NAU1 212 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 OR56A4Q8NGH8 313 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 OR6P1Q8NGX9 317 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 OR2T11Q8NH01 316 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 CNIH3Q8TBE1 160 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 HTRA1Q92743 480 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 PROX1Q92786 737 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 PPM1MQ96MI6 270 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SIGLEC11Q96RL6 698 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SH3GL1Q99961 368 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 AARSD1Q9BTE6 412 aaKnown RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 NACA2Q9H009 215 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ATXN3LQ9H3M9 355 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 PIF1Q9H611 641 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 SEMA4BQ9NPR2 832 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 CCDC177Q9NQR7 707 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 MARCH4Q9P2E8 410 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-230ENST00000495090 LIMD1Q9UGP4 676 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 ADGRE2Q9UHX3 823 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 PCTPQ9UKL6 214 aa9.54□□□□□ -0.88
SYNE1-230ENST00000495090 RIMKLBQ9ULI2 386 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms