RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CCL4P13236 92 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 ARL4CP56559 192 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 CBLBQ13191 982 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 MPP3Q13368 585 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 SQSTM1Q13501 440 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 KCTD11Q693B1 232 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 TMEM71Q6P5X7 295 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 IYDQ6PHW0 289 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 CRTC3Q6UUV7 619 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 ZFAND4Q86XD8 727 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 RELL1Q8IUW5 271 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 AGBL5Q8NDL9 886 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 SNRNP27Q8WVK2 155 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 GLYATL1Q969I3 302 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 OXNAD1Q96HP4 312 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 BPIFA1Q9NP55 256 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 SARS2Q9NP81 518 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 KLC4Q9NSK0 619 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 FOXJ2Q9P0K8 574 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 NFKBIL1Q9UBC1 381 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 KIR2DS5A0A0G2JLQ3 304 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 A0A0G2JNG1 304 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 OR5K4A6NMS3 321 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 GPR89AB7ZAQ6 455 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 C9orf172C9J069 976 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 E7ESA3 106 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 KIR2DS3K7RE56 304 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 FAM153BP0C7A2 387 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 GPR89BP0CG08 455 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 THRAP10827 490 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 MLNP12872 115 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 F3P13726 295 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 BPIP17213 487 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 CD82P27701 267 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 MAPK9P45984 424 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 WNT3AP56704 352 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 KIR2DS5Q14953 304 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 INSCQ1MX18 579 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 PLA2G4EQ3MJ16 856 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 FAM153CQ494X1 144 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 MANEAQ5SRI9 462 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 KIAA1614Q5VZ46 1190 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 CENPUQ71F23 418 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 ADGRG6Q86SQ4 1221 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 PDIK1LQ8N165 341 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 SLC25A41Q8N5S1 370 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 GDAP1Q8TB36 358 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 NCSTNQ92542 709 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 SERPINB12Q96P63 405 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 TAAR9Q96RI9 348 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 TXLNGYQ9BZA5 131 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 TMEM9Q9P0T7 183 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 SPO11Q9Y5K1 396 aa17.73■□□□□ 0.43
SQSTM1-204ENST00000453046 AP3B1O00203 1094 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 AURKAO14965 403 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 KMOO15229 486 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 MTX2O75431 263 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 CDK14O94921 469 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 CSF2RBP32927 897 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 MAGEA3P43357 314 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 CFHR1Q03591 330 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 DNAJC21Q5F1R6 531 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 SNAP47Q5SQN1 464 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 PCSK4Q6UW60 755 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 ZNF534Q76KX8 674 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 LINC00523Q86TU6 105 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 LRRTM4Q86VH4 590 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 FAM129CQ86XR2 697 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 AVL9Q8NBF6 648 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 IPMKQ8NFU5 416 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 WBP1Q96G27 269 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 TTC25Q96NG3 672 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 PLEKHG4BQ96PX9 1271 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 B3GNT4Q9C0J1 378 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 TRABDQ9H4I3 376 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 PRDM8Q9NQV8 689 aa17.72■□□□□ 0.43
SQSTM1-204ENST00000453046 ZFC3H1O60293 1989 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 LOC285095A0A1B0GVY8 99 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 A8MU76 341 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 GOLGA8MH3BSY2 632 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 VEGFDO43915 354 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 EPOP01588 193 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 FGF3P11487 239 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 HMGCLP35914 325 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 DHX9Q08211 1270 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 GTF2H3Q13889 308 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 SIRPB2Q5JXA9 342 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 LRRC8BQ6P9F7 803 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 KDELC1Q6UW63 502 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 GLT6D1Q7Z4J2 308 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 CCDC25Q86WR0 208 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 TRIM48Q8IWZ4 208 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 ZSCAN1Q8NBB4 408 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 BLOC1S5Q8TDH9 187 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 FSD1LQ9BXM9 530 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 HACD3Q9P035 362 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 CPNE7Q9UBL6 633 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 DNAJC16Q9Y2G8 782 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms