RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 GOLGA8MH3BSY2 632 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 RRP8O43159 456 aaKnown RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 B4GAT1O43505 415 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 BRINP1O60477 761 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 GOT2P00505 430 aaKnown RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 OR56A5P0C7T3 313 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 AMD1P17707 334 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 PSMA3P25788 255 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 MGAT1P26572 445 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 MLLT3P42568 568 aaPredicted RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 TRA2AQ13595 282 aaKnown RBP eCLIP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 NFE2L1Q14494 772 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 DBN1Q16643 649 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 KCTD19Q17RG1 926 aaPredicted RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 RNASEH2BQ5TBB1 312 aaKnown RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 USP53Q70EK8 1073 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 RAB11FIP2Q7L804 512 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 FBXO39Q8N4B4 442 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 OR4D9Q8NGE8 314 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 ZNF578Q96N58 590 aaPredicted RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 SERPINB12Q96P63 405 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 ERP44Q9BS26 406 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 TRIM51Q9BSJ1 452 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 RAB17Q9H0T7 212 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 UCK1Q9HA47 277 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 MRM3Q9HC36 420 aaKnown RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 CATSPERZQ9NTU4 200 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 PSMD13Q9UNM6 376 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 UTP11Q9Y3A2 253 aaKnown RBP16.06■□□□□ 0.16
SF3A1-204ENST00000447376 HEBP2Q9Y5Z4 205 aa16.06■□□□□ 0.16
SF3A1-204ENST00000447376 IGLV3-16A0A075B6K0 115 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CTAGE15A4D2H0 777 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 OR51F1A6NGY5 319 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 IFRD1O00458 451 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PLD2O14939 933 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 HGSO14964 777 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 TMEM63AO94886 807 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CTAGE8P0CG41 777 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CD1CP29017 333 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 FOXN2P32314 431 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CA5AP35218 305 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 TTPAP49638 278 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CDKN1CP49918 316 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 ARSDP51689 593 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 UBE2IP63279 158 aaKnown RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 ACVR1Q04771 509 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CALCOCO2Q13137 446 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 SQSTM1Q13501 440 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PLCL1Q15111 1095 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 SYTL3Q4VX76 610 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 DNAJC21Q5F1R6 531 aaKnown RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 METRNLQ641Q3 311 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 KLHL35Q6PF15 583 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PACS1Q6VY07 963 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 LRRC69Q6ZNQ3 347 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 TMEM26Q6ZUK4 368 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 ZNF534Q76KX8 674 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 SDCCAG8Q86SQ7 713 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CTAGE6Q86UF2 777 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CAND1Q86VP6 1230 aaKnown RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 ZNF761Q86XN6 746 aaPredicted RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PLXDC1Q8IUK5 500 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CTAGE4Q8IX94 777 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PIANPQ8IYJ0 282 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 CFAP206Q8IYR0 622 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 NCSTNQ92542 709 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 KIFC1Q9BW19 673 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 TRIM31Q9BZY9 425 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 IMP3Q9NV31 184 aaKnown RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 SLC2A6Q9UGQ3 507 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 PCDHGA8Q9Y5G5 932 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 COLEC10Q9Y6Z7 277 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 SPEGQ15772 3267 aa16.05■□□□□ 0.16
SF3A1-204ENST00000447376 TPRP12270 2363 aaKnown RBP16.05■□□□□ 0.16
SF3A1-204ENST00000447376 KNTC1P50748 2209 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 OR52A4PA6NMU1 304 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 RAD51CO43502 376 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 AVILO75366 819 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 SEC31AO94979 1220 aaKnown RBP16.04■□□□□ 0.16
SF3A1-204ENST00000447376 IVDP26440 423 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 NDUFS1P28331 727 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 CSTF2P33240 577 aaKnown RBP eCLIP16.04■□□□□ 0.16
SF3A1-204ENST00000447376 SLC19A1P41440 591 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 PDX1P52945 283 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 PCBP4P57723 403 aaKnown RBP16.04■□□□□ 0.16
SF3A1-204ENST00000447376 ERVPABLB-1P60509 514 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 CRADDP78560 199 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 PLOD1Q02809 727 aaPredicted RBP16.04■□□□□ 0.16
SF3A1-204ENST00000447376 TBC1D25Q3MII6 688 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 NKAIN2Q5VXU1 208 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 MRNIPQ6NTE8 343 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 C8orf74Q6P047 294 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 TMEM71Q6P5X7 295 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 WDR74Q6RFH5 385 aaPredicted RBP16.04■□□□□ 0.16
SF3A1-204ENST00000447376 B3GNT8Q7Z7M8 397 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 PDIK1LQ8N165 341 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 MPP5Q8N3R9 675 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 CEP112Q8N8E3 955 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 FGF11Q92914 225 aa16.04■□□□□ 0.16
SF3A1-204ENST00000447376 SGSM3Q96HU1 749 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms