RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 OR4F6Q8NGB9 312 aa11.72□□□□□ -0.53
MSH6-204ENST00000445503 FAM210AQ96ND0 272 aa11.72□□□□□ -0.53
MSH6-204ENST00000445503 SH3GL1Q99961 368 aa11.72□□□□□ -0.53
MSH6-204ENST00000445503 FAM126AQ9BYI3 521 aaPredicted RBP11.72□□□□□ -0.53
MSH6-204ENST00000445503 NSUN3Q9H649 340 aaKnown RBP11.72□□□□□ -0.53
MSH6-204ENST00000445503 OLA1Q9NTK5 396 aaKnown RBP11.72□□□□□ -0.53
MSH6-204ENST00000445503 TRMT13Q9NUP7 481 aaKnown RBP11.72□□□□□ -0.53
MSH6-204ENST00000445503 ARL15Q9NXU5 204 aa11.72□□□□□ -0.53
MSH6-204ENST00000445503 ELOVL7A1L3X0 281 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 SH3PXD2BA1X283 911 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 INSIG1O15503 277 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 OTCP00480 354 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 HSMCR30P0CW71 290 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 RAP2AP10114 183 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 ITGALP20701 1170 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 OGNP20774 298 aaKnown RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 FMO3P31513 532 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 ATXN7L2Q5T6C5 722 aaPredicted RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 BORAQ6PGQ7 559 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 HACD2Q6Y1H2 254 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 LIX1Q8N485 282 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 RTP3Q9BQQ7 232 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 AIG1Q9NVV5 245 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 ST14Q9Y5Y6 855 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 POLR2AP24928 1970 aaKnown RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 KPNA4O00629 521 aaPredicted RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 SLC25A14O95258 325 aaPredicted RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 ABCB1P08183 1280 aaPredicted RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 AQP1P29972 269 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 YBEYP58557 167 aaPredicted RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 CBLBQ13191 982 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 SERINC3Q13530 473 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 ATP6AP1Q15904 470 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 FAM117BQ6P1L5 589 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 EPHX4Q8IUS5 362 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 CENPSQ8N2Z9 138 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 ZNF540Q8NDQ6 660 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 SLC13A3Q8WWT9 602 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 PPP3R2Q96LZ3 170 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 NODALQ96S42 347 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 SEZ6LQ9BYH1 1024 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 PTBP2Q9UKA9 531 aaKnown RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 TNPO3Q9Y5L0 923 aaKnown RBP11.71□□□□□ -0.53
MSH6-204ENST00000445503 PCNTO95613 3336 aa11.71□□□□□ -0.53
MSH6-204ENST00000445503 LCHNA4D1U4 455 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 TTC36A6NLP5 189 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 PRMT5O14744 637 aaPredicted RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 XPNPEP2O43895 674 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 FADS2O95864 444 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 DLGAP3O95886 979 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 FAM163BP0C2L3 166 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 CDH1P12830 882 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ALDH3B2P48448 385 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 BOP1Q14137 746 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 DMC1Q14565 340 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 TGFBIQ15582 683 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 TRIP4Q15650 581 aaPredicted RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 ZNF829Q3KNS6 432 aaPredicted RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 KANK2Q63ZY3 851 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ZCCHC8Q6NZY4 707 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 PGBD5Q8N414 524 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 C6orf62Q9GZU0 229 aaPredicted RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 RBM38Q9H0Z9 239 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 HMG20AQ9NP66 347 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 hCG_2039718K7EN88 272 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 K7EPI3 171 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 MUSKO15146 869 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ALDH2P05091 517 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ALPIP09923 528 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 RPL17P18621 184 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 JAK1P23458 1154 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 SERPINB1P30740 379 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 DAB2P98082 770 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 SPANXN4Q5MJ08 99 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 FAM171BQ6P995 826 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ENPP6Q6UWR7 440 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 PSMA8Q8TAA3 256 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 FUBP1Q96AE4 644 aaKnown RBP11.71□□□□□ -0.54
MSH6-204ENST00000445503 ITCHQ96J02 903 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 SLC2A11Q9BYW1 496 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 CSNK1G1Q9HCP0 422 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 LTB4R2Q9NPC1 389 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 ABCB10Q9NRK6 738 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 TMEM248Q9NWD8 314 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 AASSQ9UDR5 926 aa11.71□□□□□ -0.54
MSH6-204ENST00000445503 CXCR6O00574 342 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 KRT6AP02538 564 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 KRT6BP04259 564 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 VARSP26640 1264 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 SLC26A3P40879 764 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 KRT6CP48668 564 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 CLCN2P51788 898 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 YBX1P67809 324 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 SLC36A3Q495N2 470 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 PIWIL3Q7Z3Z3 882 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 ADAMTSL2Q86TH1 951 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 PIANPQ8IYJ0 282 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 SUSD3Q96L08 255 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ZNF599Q96NL3 588 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 DERL2Q9GZP9 239 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms