RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TIGD5Q53EQ6 642 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 UBXN11Q5T124 520 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 GIPC3Q8TF64 312 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 LCN9Q8WX39 176 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 MAGEH1Q9H213 219 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ZNF358Q9NW07 568 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 NOS1APO75052 506 aaPredicted RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 POP4O95707 220 aaKnown RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 FABP3P05413 133 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 GIMD1P0DJR0 217 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 PRKCZQ05513 592 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.34□□□□□ -0.59
USP53-201ENST00000274030 RNF220Q5VTB9 566 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ZDHHC20Q5W0Z9 365 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 MSANTD2Q6P1R3 559 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 C7orf61Q8IZ16 206 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 AUTS2Q8WXX7 1259 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 C7orf26Q96N11 449 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 GKN1Q9NS71 199 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 MROH2AA6NES4 1674 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ZNF536O15090 1300 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 NEMP2A6NFY4 417 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 SLC38A8A6NNN8 435 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 C8AP07357 584 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 CDH12P55289 794 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ABATP80404 500 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 TMEM63BQ5T3F8 832 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 DENND2DQ9H6A0 471 aaPredicted RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 CCNB1IP1Q9NPC3 277 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 DNAJC28Q9NX36 388 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 NUDT4Q9NZJ9 180 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 CCNDBP1O95273 360 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 LCA5LO95447 670 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 PRKCHP24723 683 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 PTGIRP43119 386 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 SMARCD3Q6STE5 483 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 OAFQ86UD1 273 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 HID1Q8IV36 788 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 NRSN1Q8IZ57 195 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ARL10Q8N8L6 244 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 OR13C4Q8NGS5 318 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CDK15Q96Q40 435 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 GPER1Q99527 375 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 TMEM27Q9HBJ8 222 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 POLR3BQ9NW08 1133 aaPredicted RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 ALKBH4Q9NXW9 302 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 VNN1O95497 513 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UROSP10746 265 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 GRIA1P42261 906 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 SLC1A2P43004 574 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ASPAP45381 313 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ASMTP46597 345 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 IRF9Q00978 393 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 MXD1Q05195 221 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 GRB14Q14449 540 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 LRRC17Q8N6Y2 441 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 HERVK_113Q902F9 699 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ARMC5Q96C12 935 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 PYCR2Q96C36 320 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 HEPHQ9BQS7 1158 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP53-201ENST00000274030 COMMD3-BMI1R4GMX3 469 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 FUT4P22083 530 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 IDH3AP50213 366 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CAP1Q01518 475 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 VITQ6UXI7 678 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 JAZF1Q86VZ6 243 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 MPP5Q8N3R9 675 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 AP3S1Q92572 193 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CNPPD1Q9BV87 410 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ZNF214Q9UL59 606 aaPredicted RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 TMEM131LA2VDJ0 1609 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 GNB5O14775 395 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 PER2O15055 1255 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UGT2B11O75310 529 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 IFNW1P05000 195 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 GJA1P17302 382 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UGT1A6P19224 532 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CYP3A5P20815 502 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UGT1A1P22309 533 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UGT1A4P22310 534 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 UGT1A3P35503 534 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 MTPNP58546 118 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 LARS2Q15031 903 aaKnown RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 GDF6Q6KF10 455 aaPredicted RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 TMEM214Q6NUQ4 689 aaKnown RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 PGAM4Q8N0Y7 254 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CAPNS2Q96L46 248 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 JSRP1Q96MG2 331 aaPredicted RBP11.33□□□□□ -0.6
USP53-201ENST00000274030 GAL3ST1Q99999 423 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CCDC28BQ9BUN5 200 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ST6GALNAC4Q9H4F1 302 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 COLEC10Q9Y6Z7 277 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 MASP1P48740 699 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 ILF3Q12906 894 aaKnown RBP eCLIP11.33□□□□□ -0.64e-6■■■■□ 20.7
USP53-201ENST00000274030 BNIP1Q12981 228 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 CBX3Q13185 183 aa11.33□□□□□ -0.6
USP53-201ENST00000274030 FAM174BQ3ZCQ3 159 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms