RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ZFAND4Q86XD8 727 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 AGBL5Q8NDL9 886 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 UBE2Q2Q8WVN8 375 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 ZMYND15Q9H091 742 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 UCK1Q9HA47 277 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 SLC40A1Q9NP59 571 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 OCIAD1Q9NX40 245 aa18.05■□□□□ 0.48
CLN3-237ENST00000569030 LILRA5A6NI73 299 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 SGTAO43765 313 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 KCNJ13O60928 360 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 ETS1P14921 441 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 TYRP1P17643 537 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 STIP1P31948 543 aaKnown RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 CSTF2P33240 577 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLN3-237ENST00000569030 CDKN1CP49918 316 aaPredicted RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 DMPKQ09013 629 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 NFE2L1Q14494 772 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 ARHGAP40Q5TG30 622 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 TRIM48Q8IWZ4 208 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 AVL9Q8NBF6 648 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 LRRC45Q96CN5 670 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 DNAJC1Q96KC8 554 aaKnown RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 FRMD8P1Q9BZ68 369 aaPredicted RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 PSMD13Q9UNM6 376 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 ZNF148Q9UQR1 794 aa18.04■□□□□ 0.48
CLN3-237ENST00000569030 DNMT3AQ9Y6K1 912 aaPredicted RBP18.04■□□□□ 0.48
CLN3-237ENST00000569030 FASNP49327 2511 aaKnown RBP18.03■□□□□ 0.48
CLN3-237ENST00000569030 PSMD3O43242 534 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 EFSO43281 561 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 PBLDP30039 288 aaPredicted RBP18.03■□□□□ 0.48
CLN3-237ENST00000569030 HADHAP40939 763 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 UCNP55089 124 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 POU6F1Q14863 301 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 SIX1Q15475 284 aaPredicted RBP18.03■□□□□ 0.48
CLN3-237ENST00000569030 LONRF2Q1L5Z9 754 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 METRNLQ641Q3 311 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 XKR5Q6UX68 686 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 ART4Q93070 314 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 TAAR9Q96RI9 348 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 C19orf43Q9BQ61 176 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 EPB41L1Q9H4G0 881 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 ETNK1Q9HBU6 452 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 NLE1Q9NVX2 485 aaPredicted RBP18.03■□□□□ 0.48
CLN3-237ENST00000569030 WDR70Q9NW82 654 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 KLHL3Q9UH77 587 aa18.03■□□□□ 0.48
CLN3-237ENST00000569030 EFCAB7A8K855 629 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 UBXN7O94888 489 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 IFNB1P01574 187 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 PRSS56P0CW18 603 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 MC4RP32245 332 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 GFERP55789 205 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 VAC14Q08AM6 782 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 SRSF6Q13247 344 aaKnown RBP18.02■□□□□ 0.48
CLN3-237ENST00000569030 SEPT6Q14141 434 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 GPR18Q14330 331 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 RPE65Q16518 533 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 SNX20Q7Z614 316 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 FAM129CQ86XR2 697 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 NXPE1Q8N323 547 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 BMPERQ8N8U9 685 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 GLIS1Q8NBF1 620 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 OR52K1Q8NGK4 314 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 GPR150Q8NGU9 434 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 CXorf40BQ96DE9 158 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 ZNF514Q96K75 400 aaPredicted RBP18.02■□□□□ 0.48
CLN3-237ENST00000569030 TLR10Q9BXR5 811 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 B3GNT4Q9C0J1 378 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 POT1Q9NUX5 634 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 SLC39A1Q9NY26 324 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 CRLS1Q9UJA2 301 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 B3GALT1Q9Y5Z6 326 aa18.02■□□□□ 0.48
CLN3-237ENST00000569030 CCDC78A2IDD5 438 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 MGAT4DA6NG13 374 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 MROH6A6NGR9 719 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 LIPCP11150 499 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 GRIA1P42261 906 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 BCL7AQ4VC05 210 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 TMEM164Q5U3C3 297 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 DTX1Q86Y01 620 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 PLXDC1Q8IUK5 500 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 LILRA3Q8N6C8 439 aaPredicted RBP18.01■□□□□ 0.47
CLN3-237ENST00000569030 OR2L2Q8NH16 312 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 SNRNP27Q8WVK2 155 aaKnown RBP18.01■□□□□ 0.47
CLN3-237ENST00000569030 ULK4Q96C45 1275 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 CDKN2AIPNLQ96HQ2 116 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 ALS2CR12Q96Q35 445 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 UBL7Q96S82 380 aaPredicted RBP18.01■□□□□ 0.47
CLN3-237ENST00000569030 CCNL2Q96S94 520 aaPredicted RBP18.01■□□□□ 0.47
CLN3-237ENST00000569030 FAM8A1Q9UBU6 413 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 PPP2R2CQ9Y2T4 447 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 PCDHGA3Q9Y5H0 932 aa18.01■□□□□ 0.47
CLN3-237ENST00000569030 MN1Q10571 1320 aaPredicted RBP18■□□□□ 0.47
CLN3-237ENST00000569030 TRBV5-4A0A0C4DH59 114 aa18■□□□□ 0.47
CLN3-237ENST00000569030 TEX51A0A1B0GUA7 166 aa18■□□□□ 0.47
CLN3-237ENST00000569030 B4E171 279 aa18■□□□□ 0.47
CLN3-237ENST00000569030 H7C0S8 307 aa18■□□□□ 0.47
CLN3-237ENST00000569030 K7ENP7 123 aa18■□□□□ 0.47
CLN3-237ENST00000569030 C9P02748 559 aa18■□□□□ 0.47
CLN3-237ENST00000569030 ZSCAN5DPP0CG00 497 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms