RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ATPAF2Q8N5M1 289 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TEX19Q8NA77 164 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 DENND6BQ8NEG7 585 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 HCAR2Q8TDS4 363 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 LRRN4Q8WUT4 740 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 NSMCE1Q8WV22 266 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TSACCQ96A04 125 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-230ENST00000557427 C9orf72Q96LT7 481 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 PSKH2Q96QS6 385 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TAAR9Q96RI9 348 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 C10orf88Q9H8K7 445 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 RDH14Q9HBH5 336 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 PCDHGC4Q9Y5F7 938 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 HIVEP3Q5T1R4 2406 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 CHD5Q8TDI0 1954 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 ADGRG4Q8IZF6 3080 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 SHANK1Q9Y566 2161 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 E7EVH7 732 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 KCNN4O15554 427 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 B4GAT1O43505 415 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 CDH16O75309 829 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 PEX11BO96011 259 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 GLB1P16278 677 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 SERPINB6P35237 376 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 MAGEA6P43360 314 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 LIG3P49916 1009 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 MAXP61244 160 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 YPEL5P62699 121 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 B4GALNT1Q00973 533 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 GUCY1A3Q02108 690 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 ELP6Q0PNE2 266 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 PDIA2Q13087 525 aaKnown RBP12.39□□□□□ -0.43
SHMT2-230ENST00000557427 RASA2Q15283 850 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 ELOCQ15369 112 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 LONRF1Q17RB8 773 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 CERCAMQ5T4B2 595 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 MARC1Q5VT66 337 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 ANKRD22Q5VYY1 191 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 NCBP2-AS2Q69YL0 99 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 BRAT1Q6PJG6 821 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 OGFOD3Q6PK18 319 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 HEATR4Q86WZ0 1026 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 TDRPQ86YL5 185 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 PGBD5Q8N414 524 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 OR6C4Q8NGE1 309 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 PDCD6IPQ8WUM4 868 aaKnown RBP12.39□□□□□ -0.43
SHMT2-230ENST00000557427 SCG3Q8WXD2 468 aaKnown RBP12.39□□□□□ -0.43
SHMT2-230ENST00000557427 ZNF599Q96NL3 588 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 QKIQ96PU8 341 aaKnown RBP eCLIP12.39□□□□□ -0.43
SHMT2-230ENST00000557427 TUBGCP5Q96RT8 1024 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 NOD2Q9HC29 1040 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 PRDM8Q9NQV8 689 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 EURLQ9NYK6 297 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 FETUBQ9UGM5 382 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 HEY1Q9Y5J3 304 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 LRP4O75096 1905 aa12.39□□□□□ -0.43
SHMT2-230ENST00000557427 LOC101059948A0A1B0GTJ6 334 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 TSPAN11A1L157 253 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 SMIM23A6NLE4 172 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 RAD1O60671 282 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 TMEM63AO94886 807 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 DDAH2O95865 285 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 PDGFAP04085 211 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 ALPIP09923 528 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 PNLIPP16233 465 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 RBL1P28749 1068 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 SLCO1A2P46721 670 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 SUOXP51687 545 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 POLR2LP62875 67 aaKnown RBP12.38□□□□□ -0.43
SHMT2-230ENST00000557427 IFI35P80217 286 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-230ENST00000557427 BASP1P80723 227 aaKnown RBP12.38□□□□□ -0.43
SHMT2-230ENST00000557427 KCNJ11Q14654 390 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 PAFAH1B3Q15102 231 aaKnown RBP12.38□□□□□ -0.43
SHMT2-230ENST00000557427 HID1Q8IV36 788 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 UNC5BQ8IZJ1 945 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 PDIK1LQ8N165 341 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 BBS5Q8N3I7 341 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 TP53I13Q8NBR0 393 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-230ENST00000557427 OLFM3Q96PB7 478 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 NUDT22Q9BRQ3 303 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 SPRY4Q9C004 299 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 NT5MQ9NPB1 228 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 CASS4Q9NQ75 786 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 LRIT1Q9P2V4 623 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 PILRAQ9UKJ1 303 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 ACTL7BQ9Y614 415 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 NF1P21359 2839 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 CSMD2Q7Z408 3487 aa12.38□□□□□ -0.43
SHMT2-230ENST00000557427 CELSR1Q9NYQ6 3014 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 IGHV5-10-1A0A0J9YXX1 117 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-230ENST00000557427 C5orf60A6NFR6 353 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 EFCAB7A8K855 629 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 TRAFD1O14545 582 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-230ENST00000557427 MFSD11O43934 449 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 CTSEP14091 401 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 PRF1P14222 555 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 PHBP35232 272 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 AP1S1P61966 158 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms