RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DLSTP36957 453 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 STAT5AP42229 794 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 CHRNA4P43681 627 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 SH3BP2P78314 561 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 SLC1A5Q15758 541 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 LONRF2Q1L5Z9 754 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 ITPRIPL1Q6GPH6 555 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 TMEM220Q6QAJ8 160 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 TTC30BQ8N4P2 665 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 GALNT6Q8NCL4 622 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 C9orf43Q8TAL5 461 aaPredicted RBP14.46□□□□□ -0.09
VPS28-215ENST00000531924 APOBEC4Q8WW27 367 aaKnown RBP14.46□□□□□ -0.09
VPS28-215ENST00000531924 RSC1A1Q92681 617 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 RNF31Q96EP0 1072 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 MRGPRX2Q96LB1 330 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 QKIQ96PU8 341 aaKnown RBP eCLIP14.46□□□□□ -0.09
VPS28-215ENST00000531924 HEMGNQ9BXL5 484 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A7Q9HAW7 530 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A10Q9HAW8 530 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A8Q9HAW9 530 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 PDE7BQ9NP56 450 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 SIDT1Q9NXL6 827 aaKnown RBP14.46□□□□□ -0.09
VPS28-215ENST00000531924 IL17CQ9P0M4 197 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 TMPRSS11EQ9UL52 423 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 hCG_1818297A0A087WSY0 165 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 OR2AG2A6NM03 316 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 C2orf81A6NN90 581 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 TERTO14746 1132 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 KIF1CO43896 1103 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 ANXA9O76027 345 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 STK10O94804 968 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 KIAA0754O94854 1291 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 DLGAP3O95886 979 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 MT-ND3P03897 115 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 GEMP55040 296 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 HADHBP55084 474 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 NAP1L1P55209 391 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 XRCC4Q13426 336 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 PRPSAP1Q14558 356 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 FNBP1LQ5T0N5 605 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 ARMC6Q6NXE6 501 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 PRSS42Q7Z5A4 293 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 DAAM2Q86T65 1068 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 PPP1R3BQ86XI6 285 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 BEND7Q8N7W2 519 aaPredicted RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 RASGEF1AQ8N9B8 481 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 SIDT2Q8NBJ9 832 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 ZNF398Q8TD17 642 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 DTX3LQ8TDB6 740 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 LRRC45Q96CN5 670 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 OXNAD1Q96HP4 312 aaPredicted RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 ZNF514Q96K75 400 aaPredicted RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 TRIM5Q9C035 493 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 GOLPH3Q9H4A6 298 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 ZNF71Q9NQZ8 489 aaPredicted RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 IMP3Q9NV31 184 aaKnown RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 KCND3Q9UK17 655 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 PSMD13Q9UNM6 376 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 WDR37Q9Y2I8 494 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 PCDHA13Q9Y5I0 950 aa14.45□□□□□ -0.1
VPS28-215ENST00000531924 DNMT3AQ9Y6K1 912 aaPredicted RBP14.45□□□□□ -0.1
VPS28-215ENST00000531924 ARHGAP6O43182 974 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 IPO7O95373 1038 aaKnown RBP14.44□□□□□ -0.1
VPS28-215ENST00000531924 FECHP22830 423 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 CYLC1P35663 651 aaPredicted RBP14.44□□□□□ -0.1
VPS28-215ENST00000531924 CETN2P41208 172 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 TLE1Q04724 770 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 ADCY2Q08462 1091 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 KRT33BQ14525 404 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 RPE65Q16518 533 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 GPRC6AQ5T6X5 926 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 DET1Q7L5Y6 550 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 C11orf96Q7Z7L8 435 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 DDHD1Q8NEL9 900 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 UBXN4Q92575 508 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 DCUN1D1Q96GG9 259 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 FICDQ9BVA6 458 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 EPHA6Q9UF33 1036 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 CROTQ9UKG9 612 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 RARRES3Q9UL19 164 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 PADI1Q9ULC6 663 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 KCTD3Q9Y597 815 aa14.44□□□□□ -0.1
VPS28-215ENST00000531924 ZFC3H1O60293 1989 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 TLN1Q9Y490 2541 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 UBA6A0AVT1 1052 aaPredicted RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 PRR19A6NJB7 356 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 SPAG6O75602 509 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 PRAMEF1O95521 474 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 AGTP01019 485 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 PTMAP06454 111 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 SLC35G4P0C7Q5 338 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 RALBP11234 206 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 ZNF28P17035 718 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 NELFEP18615 380 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 LPOP22079 712 aaPredicted RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 OAS2P29728 719 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 CTSCP53634 463 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 DMPKQ09013 629 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 TBX2Q13207 712 aaPredicted RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 TUBB3Q13509 450 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms