RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C9P02748 559 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 CCDC175P0C221 793 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 TYRP1P17643 537 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 FOXN2P32314 431 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 LEPRP48357 1165 aaKnown RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 GPLD1P80108 840 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 SEMA5AQ13591 1074 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 GPR18Q14330 331 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 PRPSAP1Q14558 356 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 SEMA3AQ14563 771 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 RPE65Q16518 533 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 CCNG2Q16589 344 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 DBN1Q16643 649 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 BCL7AQ4VC05 210 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 FNBP1LQ5T0N5 605 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 DUS1LQ6P1R4 473 aaKnown RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 TTC27Q6P3X3 843 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 DRICH1Q6PGQ1 229 aaPredicted RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 WDR74Q6RFH5 385 aaPredicted RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 ZNF534Q76KX8 674 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 NXPE1Q8N323 547 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 SNRNP27Q8WVK2 155 aaKnown RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 KCNE4Q8WWG9 221 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 LINC00615Q96LM1 132 aaPredicted RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 RMDN2Q96LZ7 410 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 INSM2Q96T92 566 aaPredicted RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 SLC38A3Q99624 504 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 STRADBQ9C0K7 418 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 LRRC40Q9H9A6 602 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 UCK1Q9HA47 277 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 GRPEL1Q9HAV7 217 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 APMAPQ9HDC9 416 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 CASS4Q9NQ75 786 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 SIDT1Q9NXL6 827 aaKnown RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 SMARCAL1Q9NZC9 954 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 PSMD13Q9UNM6 376 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 B3GALT1Q9Y5Z6 326 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 PRSS21Q9Y6M0 314 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 BOD1L1Q8NFC6 3051 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 FASNP49327 2511 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 CCDC162PA2VCL2 907 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 A8MU76 341 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 TMX2-CTNND1H3BSU7 103 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 HGSO14964 777 aaPredicted RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 RRP8O43159 456 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 KIF1CO43896 1103 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 PBLDP30039 288 aaPredicted RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 STIP1P31948 543 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 MC4RP32245 332 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 MAPK10P53779 464 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 EPHA4P54764 986 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 ACVR1Q04771 509 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 TRA2AQ13595 282 aaKnown RBP eCLIP10.44□□□□□ -0.74
CD44-227ENST00000528086 ITGA9Q13797 1035 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 SEL1L2Q5TEA6 688 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 CAPRIN2Q6IMN6 1127 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 SNX20Q7Z614 316 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 SLC9B2Q86UD5 537 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 AMZ2Q86W34 360 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 TXLNBQ8N3L3 684 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 CLDN19Q8N6F1 224 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 GDAP1Q8TB36 358 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 NCSTNQ92542 709 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 RNF31Q96EP0 1072 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 MS4A14Q96JA4 679 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 CMKLR1Q99788 373 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 FEZ2Q9UHY8 353 aaPredicted RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 DRG1Q9Y295 367 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 NEU2Q9Y3R4 380 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 PCDHGA3Q9Y5H0 932 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 CFAP20Q9Y6A4 193 aaKnown RBP10.44□□□□□ -0.74
CD44-227ENST00000528086 PIEZO2Q9H5I5 2752 aa10.44□□□□□ -0.74
CD44-227ENST00000528086 MGAT4DA6NG13 374 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 PDZK1P1A8MUH7 402 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.43□□□□□ -0.74
CD44-227ENST00000528086 FANCGO15287 622 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 C1QL1O75973 258 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 CRTAMO95727 393 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 IFNB1P01574 187 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 FGGP02679 453 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 JMJD7P0C870 316 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 IDSP22304 550 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 ACRV1P26436 265 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 PDHA2P29803 388 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 PRLHRP49683 370 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 SNAP47Q5SQN1 464 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 CERS6Q6ZMG9 384 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 LRRC69Q6ZNQ3 347 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 TIPARPQ7Z3E1 657 aaKnown RBP10.43□□□□□ -0.74
CD44-227ENST00000528086 VASH2Q86V25 355 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 SERPINA9Q86WD7 417 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 JAMLQ86YT9 394 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 SPNS2Q8IVW8 549 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 RASGEF1CQ8N431 466 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 OR2L2Q8NH16 312 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 OR10G6Q8NH81 332 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 COG1Q8WTW3 980 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 STYXQ8WUJ0 223 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 TTC9Q92623 222 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 ART4Q93070 314 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms