RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TXNDC5Q8NBS9 432 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 TRPC4APQ8TEL6 797 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 DNASE1L2Q92874 299 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ZNF382Q96SR6 550 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 RIOK2Q9BVS4 552 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 MAN2B1O00754 1011 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 SKAP2O75563 359 aaPredicted RBP8.27□□□□□ -1.08
USP54-203ENST00000418501 CDK14O94921 469 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 ESRRBO95718 433 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 ARSAP15289 507 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 AP2B1P63010 937 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 HSPA14Q0VDF9 509 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 PCBP2Q15366 365 aaKnown RBP eCLIP8.27□□□□□ -1.082e-11■■■■□ 23.5
USP54-203ENST00000418501 SKIV2LQ15477 1246 aaKnown RBP8.27□□□□□ -1.08
USP54-203ENST00000418501 CYB5D1Q6P9G0 228 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 ADGRD2Q7Z7M1 963 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 ZNF513Q8N8E2 541 aaPredicted RBP8.27□□□□□ -1.08
USP54-203ENST00000418501 DDHD1Q8NEL9 900 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 TNIP2Q8NFZ5 429 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 TSPEARQ8WU66 669 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 C19orf60Q96EN9 201 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 LRGUKQ96M69 825 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 CCDC138Q96M89 665 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 ZSWIM3Q96MP5 696 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 FAM83CQ9BQN1 747 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 P2RY12Q9H244 342 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 FAM8A1Q9UBU6 413 aa8.27□□□□□ -1.08
USP54-203ENST00000418501 NCF1BA6NI72 391 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 NCF1CA8MVU1 366 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 A8MX80 341 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 UBXN8O00124 270 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ITM2AO43736 263 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 COX4I1P13073 169 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 NCF1P14598 390 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 IGFBP4P22692 258 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 CXCR2P25025 360 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 GJA4P35212 333 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 RPIAP49247 311 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ZNF234Q14588 700 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 FAM182AQ5T1J6 154 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 SCUBE1Q8IWY4 988 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 SPATA6LQ8N4H0 392 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 CHST14Q8NCH0 376 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 OR2T3Q8NH03 318 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 CD200R1Q8TD46 325 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 GLMNQ92990 594 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ZNF419Q96HQ0 510 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 LMLNQ96KR4 655 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 NMUR2Q9GZQ4 415 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ARHGEF3Q9NR81 526 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 DNAJC11Q9NVH1 559 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 WASF2Q9Y6W5 498 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 SHROOM3Q8TF72 1996 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 LRRC72A6NJI9 287 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 K7EPI3 171 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 PSMD12O00232 456 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 CACNB4O00305 520 aaPredicted RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 FKBP6O75344 327 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ADRB3P13945 408 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ITGB6P18564 788 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 MRPS21P82921 87 aaKnown RBP8.27□□□□□ -1.09
USP54-203ENST00000418501 LAPTM5Q13571 262 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 PTPRCAPQ14761 206 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 SPATS1Q496A3 300 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 C1orf146Q5VVC0 180 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 GALNT13Q8IUC8 556 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 TRAPPC5Q8IUR0 188 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 FAM161BQ96MY7 647 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 PCBD2Q9H0N5 130 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ELOVL6Q9H5J4 265 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ZNF576Q9H609 170 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 RMI1Q9H9A7 625 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 ITM2CQ9NQX7 267 aa8.27□□□□□ -1.09
USP54-203ENST00000418501 H3BM21 787 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 AURKAO14965 403 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 AP1G1O43747 822 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UGT1A6P19224 532 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UGT1A1P22309 533 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UGT1A4P22310 534 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NTSR1P30989 418 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UGT1A3P35503 534 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UGT1A5P35504 534 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 KLF10Q13118 480 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 RPA4Q13156 261 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 GTF2H2Q13888 395 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 FASTKQ14296 549 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 TGFBIQ15582 683 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 PUS10Q3MIT2 529 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 GTF2H2CQ6P1K8 395 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NEK5Q6P3R8 708 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 PIM3Q86V86 326 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 EEF1AKMT1Q8WVE0 214 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 FAM136AQ96C01 138 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 GPR78Q96P69 363 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 SH3GL1Q99961 368 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 POLMQ9NP87 494 aaPredicted RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 SEMA4BQ9NPR2 832 aaPredicted RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 L3MBTL1Q9Y468 752 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NUP205Q92621 2012 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NUAK1O60285 661 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms