RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 GGA2Q9UJY4 613 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 DGUOKQ16854 277 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 RIOK2Q9BVS4 552 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 ERGIC3Q9Y282 383 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 HDAC3O15379 428 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 SLC7A2P52569 658 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 LAPTM5Q13571 262 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CPNE9Q8IYJ1 553 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PTCD2Q8WV60 388 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 CDH7Q9ULB5 785 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CA14Q9ULX7 337 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PCBP2Q15366 365 aaKnown RBP eCLIP11.23□□□□□ -0.612e-6■■■■□ 24.3
TTC28-201ENST00000397906 SLC26A9Q7LBE3 791 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CTU1Q7Z7A3 348 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 C4orf32Q8N8J7 132 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 TRPV3Q8NET8 790 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CLEC4MQ9H2X3 399 aaPredicted RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 TMEM27Q9HBJ8 222 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 RNF186Q9NXI6 227 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 EIF2B4Q9UI10 523 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 CPSF4LA6NMK7 179 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 CASRP41180 1078 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 YBEYP58557 167 aaPredicted RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 AP1S1P61966 158 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 SCRN3Q0VDG4 424 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 LDLRAP1Q5SW96 308 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 TPGS2Q68CL5 300 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 GALNTL5Q7Z4T8 443 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CHERPQ8IWX8 916 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 ART5Q96L15 291 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 A0A075B6Q4 140 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 KPNA4O00629 521 aaPredicted RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 HOXB2P14652 356 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 TAPBPLQ9BX59 468 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 BCO2Q9BYV7 579 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 KIR3DL1P43629 444 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PSMD4P55036 377 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 MLIPQ5VWP3 458 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 COX18Q8N8Q8 333 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 FAM81AQ8TBF8 368 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 ALG3Q92685 438 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 ACSS3Q9H6R3 686 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 RNF121Q9H920 327 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CLCA3PQ9Y6N3 262 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 RGSL1A5PLK6 1076 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 S100GP29377 79 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CDKN2BP42772 138 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PDX1P52945 283 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 CACNA2D1P54289 1103 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 NAA20P61599 178 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 FUT2Q10981 343 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 TSPAN14Q8NG11 270 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PGM2Q96G03 612 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 LRRC4CQ9HCJ2 640 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 NDUFS4O43181 175 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 IPO13O94829 963 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 UBXN7O94888 489 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 AP2A1O95782 977 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PYDC2Q56P42 97 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 GDPD4Q6W3E5 623 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 FZD9O00144 591 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CPN2P22792 545 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CXorf57Q6NSI4 855 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 PTCD3Q96EY7 689 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 HIC2Q96JB3 615 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CLCN7P51798 805 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CCINQ13939 588 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 TAF1AQ15573 450 aaPredicted RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 TTC23Q5W5X9 447 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CLEC20AQ6ZU45 233 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 AADATQ8N5Z0 425 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 NARS2Q96I59 477 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 BTBD1Q9H0C5 482 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 SLC25A51Q9H1U9 297 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 NOL6Q9H6R4 1146 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 CYP8B1Q9UNU6 501 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 FOXO6A8MYZ6 492 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 AGXTP21549 392 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 GPD2P43304 727 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CHRNA4P43681 627 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 LRRC32Q14392 662 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 SYPL2Q5VXT5 272 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 LIX1Q8N485 282 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 PAIP1Q9H074 479 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 WRAP73Q9P2S5 460 aaPredicted RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 TLR6Q9Y2C9 796 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 TCRBV7S2A1N4TA0A589 114 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 C9J4A7 227 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 SEPHS1P49903 392 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 COL9A2Q14055 689 aaPredicted RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 INAVAQ3KP66 663 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 UTS2BQ765I0 119 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 CMTM8Q8IZV2 173 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 ZCCHC7Q8N3Z6 543 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 C12orf65Q9H3J6 166 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 OR51F1A6NGY5 319 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 WNT9AO14904 365 aa11.22□□□□□ -0.61
TTC28-201ENST00000397906 VARSP26640 1264 aaKnown RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 CCDC92Q53HC0 331 aaPredicted RBP11.22□□□□□ -0.61
TTC28-201ENST00000397906 ARCQ7LC44 396 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms