RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 AGBL5Q8NDL9 886 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 UBE2Q2Q8WVN8 375 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 ZMYND15Q9H091 742 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 UCK1Q9HA47 277 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 SLC40A1Q9NP59 571 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 OCIAD1Q9NX40 245 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 LILRA5A6NI73 299 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 SGTAO43765 313 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 KCNJ13O60928 360 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 ETS1P14921 441 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 TYRP1P17643 537 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 STIP1P31948 543 aaKnown RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 CSTF2P33240 577 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLN3-202ENST00000355477 CDKN1CP49918 316 aaPredicted RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 DMPKQ09013 629 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 NFE2L1Q14494 772 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 ARHGAP40Q5TG30 622 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 TRIM48Q8IWZ4 208 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 AVL9Q8NBF6 648 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 LRRC45Q96CN5 670 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 DNAJC1Q96KC8 554 aaKnown RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 FRMD8P1Q9BZ68 369 aaPredicted RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 PSMD13Q9UNM6 376 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 ZNF148Q9UQR1 794 aa18.04■□□□□ 0.48
CLN3-202ENST00000355477 DNMT3AQ9Y6K1 912 aaPredicted RBP18.04■□□□□ 0.48
CLN3-202ENST00000355477 FASNP49327 2511 aaKnown RBP18.03■□□□□ 0.48
CLN3-202ENST00000355477 PSMD3O43242 534 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 EFSO43281 561 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 PBLDP30039 288 aaPredicted RBP18.03■□□□□ 0.48
CLN3-202ENST00000355477 HADHAP40939 763 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 UCNP55089 124 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 POU6F1Q14863 301 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 SIX1Q15475 284 aaPredicted RBP18.03■□□□□ 0.48
CLN3-202ENST00000355477 LONRF2Q1L5Z9 754 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 METRNLQ641Q3 311 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 XKR5Q6UX68 686 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 ART4Q93070 314 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 TAAR9Q96RI9 348 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 C19orf43Q9BQ61 176 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 EPB41L1Q9H4G0 881 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 ETNK1Q9HBU6 452 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 NLE1Q9NVX2 485 aaPredicted RBP18.03■□□□□ 0.48
CLN3-202ENST00000355477 WDR70Q9NW82 654 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 KLHL3Q9UH77 587 aa18.03■□□□□ 0.48
CLN3-202ENST00000355477 EFCAB7A8K855 629 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 UBXN7O94888 489 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 IFNB1P01574 187 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 PRSS56P0CW18 603 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 MC4RP32245 332 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 GFERP55789 205 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 VAC14Q08AM6 782 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 SRSF6Q13247 344 aaKnown RBP18.02■□□□□ 0.48
CLN3-202ENST00000355477 SEPT6Q14141 434 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 GPR18Q14330 331 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 RPE65Q16518 533 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 SNX20Q7Z614 316 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 FAM129CQ86XR2 697 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 NXPE1Q8N323 547 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 BMPERQ8N8U9 685 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 GLIS1Q8NBF1 620 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 OR52K1Q8NGK4 314 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 GPR150Q8NGU9 434 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 CXorf40BQ96DE9 158 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 ZNF514Q96K75 400 aaPredicted RBP18.02■□□□□ 0.48
CLN3-202ENST00000355477 TLR10Q9BXR5 811 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 B3GNT4Q9C0J1 378 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 POT1Q9NUX5 634 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 SLC39A1Q9NY26 324 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 CRLS1Q9UJA2 301 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 B3GALT1Q9Y5Z6 326 aa18.02■□□□□ 0.48
CLN3-202ENST00000355477 CCDC78A2IDD5 438 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 MGAT4DA6NG13 374 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 MROH6A6NGR9 719 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 LIPCP11150 499 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 GRIA1P42261 906 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 BCL7AQ4VC05 210 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 TMEM164Q5U3C3 297 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 DTX1Q86Y01 620 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 PLXDC1Q8IUK5 500 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 LILRA3Q8N6C8 439 aaPredicted RBP18.01■□□□□ 0.47
CLN3-202ENST00000355477 OR2L2Q8NH16 312 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 SNRNP27Q8WVK2 155 aaKnown RBP18.01■□□□□ 0.47
CLN3-202ENST00000355477 ULK4Q96C45 1275 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 CDKN2AIPNLQ96HQ2 116 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 ALS2CR12Q96Q35 445 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 UBL7Q96S82 380 aaPredicted RBP18.01■□□□□ 0.47
CLN3-202ENST00000355477 CCNL2Q96S94 520 aaPredicted RBP18.01■□□□□ 0.47
CLN3-202ENST00000355477 FAM8A1Q9UBU6 413 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 PPP2R2CQ9Y2T4 447 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 PCDHGA3Q9Y5H0 932 aa18.01■□□□□ 0.47
CLN3-202ENST00000355477 MN1Q10571 1320 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 TRBV5-4A0A0C4DH59 114 aa18■□□□□ 0.47
CLN3-202ENST00000355477 TEX51A0A1B0GUA7 166 aa18■□□□□ 0.47
CLN3-202ENST00000355477 B4E171 279 aa18■□□□□ 0.47
CLN3-202ENST00000355477 H7C0S8 307 aa18■□□□□ 0.47
CLN3-202ENST00000355477 K7ENP7 123 aa18■□□□□ 0.47
CLN3-202ENST00000355477 C9P02748 559 aa18■□□□□ 0.47
CLN3-202ENST00000355477 ZSCAN5DPP0CG00 497 aa18■□□□□ 0.47
CLN3-202ENST00000355477 AMD1P17707 334 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms