RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MBNL1Q9NR56 388 aaKnown RBP15.05■□□□□ -0
TRIM28-209ENST00000597423 DNMT3AQ9Y6K1 912 aaPredicted RBP15.05■□□□□ -0
TRIM28-209ENST00000597423 MYLKQ15746 1914 aa15.05■□□□□ -0
TRIM28-209ENST00000597423 ATG2BQ96BY7 2078 aa15.05■□□□□ -0
TRIM28-209ENST00000597423 IGHV1OR15-9A0A0B4J2B8 117 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 K7ESM1 405 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 EIF3FO00303 357 aaPredicted RBP15.04■□□□□ -0
TRIM28-209ENST00000597423 LAMTOR5O43504 91 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 NIPSNAP2O75323 286 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 SOD1P00441 154 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 MYCLP1P12525 358 aaPredicted RBP15.04■□□□□ -0
TRIM28-209ENST00000597423 HTR1BP28222 390 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 CA5AP35218 305 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 CSRP3P50461 194 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 ATP1A2P50993 1020 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 YPEL5P62699 121 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PPP2CBP62714 309 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PPP2CAP67775 309 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 B4GALNT1Q00973 533 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PLOD1Q02809 727 aaPredicted RBP15.04■□□□□ -0
TRIM28-209ENST00000597423 ACAP2Q15057 778 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 TMEM220Q6QAJ8 160 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PAQR3Q6TCH7 311 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 DET1Q7L5Y6 550 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 ADGRG6Q86SQ4 1221 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 CLEC14AQ86T13 490 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 C11orf74Q86VG3 221 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 ZBTB2Q8N680 514 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 RASGEF1AQ8N9B8 481 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 CCDC63Q8NA47 563 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PLA2G15Q8NCC3 412 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 ASZ1Q8WWH4 475 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 SCYL1Q96KG9 808 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 UBXN10Q96LJ8 280 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PAIP2Q9BPZ3 127 aaKnown RBP15.04■□□□□ -0
TRIM28-209ENST00000597423 APOOQ9BUR5 198 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 TPSD1Q9BZJ3 242 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 OR2AG1Q9H205 316 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 DLGAP2Q9P1A6 1054 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 PRSS21Q9Y6M0 314 aa15.04■□□□□ -0
TRIM28-209ENST00000597423 MTX2O75431 263 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 NEFHP12036 1026 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 ENO3P13929 434 aaPredicted RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 CHN1P15882 459 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 MDH1P40925 334 aaKnown RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 CLCN7P51798 805 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 CSHL1Q14406 222 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 BCL7AQ4VC05 210 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 PLEKHS1Q5SXH7 462 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 N4BP2L1Q5TBK1 243 aaPredicted RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 CWF19L1Q69YN2 538 aaKnown RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 TAX1BP1Q86VP1 789 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 TRIM42Q8IWZ5 723 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 SIDT2Q8NBJ9 832 aaKnown RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 DENND1AQ8TEH3 1009 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 RLN3Q8WXF3 142 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 FOXJ1Q92949 421 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 PDLIM5Q96HC4 596 aaKnown RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 MRPL57Q9BQC6 102 aaKnown RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 DERL2Q9GZP9 239 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 C6orf106Q9H6K1 298 aaPredicted RBP15.03■□□□□ -0
TRIM28-209ENST00000597423 ATXN10Q9UBB4 475 aa15.03■□□□□ -0
TRIM28-209ENST00000597423 C17orf113A0A1B0GUU1 675 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 IQCF5A8MTL0 148 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 METTL12A8MUP2 240 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 K7ESF4 209 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 RAD51BO15315 384 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 PI15O43692 258 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 KCNJ13O60928 360 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 ZNF37AP17032 561 aaPredicted RBP15.02■□□□□ -0
TRIM28-209ENST00000597423 VCLP18206 1134 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 ITGB6P18564 788 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 TAC1P20366 129 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 MAPK9P45984 424 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 RABIFP47224 123 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 PXNP49023 591 aaPredicted RBP15.02■□□□□ -0
TRIM28-209ENST00000597423 PRLHRP49683 370 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 TIAL1Q01085 375 aaKnown RBP eCLIP15.02■□□□□ -0
TRIM28-209ENST00000597423 ASPHQ12797 758 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 PTK2BQ14289 1009 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 ZNF460Q14592 562 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 ZNF648Q5T619 568 aaPredicted RBP15.02■□□□□ -0
TRIM28-209ENST00000597423 LVRNQ6Q4G3 990 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 PIM3Q86V86 326 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 TRAPPC5Q8IUR0 188 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 MDM1Q8TC05 714 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 RDH11Q8TC12 318 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 CD200R1Q8TD46 325 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 MGARPQ8TDB4 240 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 KCTD4Q8WVF5 259 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 ELMO1Q92556 727 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 FAM136AQ96C01 138 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 NXNL1Q96CM4 212 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 FAM111AQ96PZ2 611 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 TFB2MQ9H5Q4 396 aaKnown RBP15.02■□□□□ -0
TRIM28-209ENST00000597423 CD93Q9NPY3 652 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 OR1A2Q9Y585 309 aa15.02■□□□□ -0
TRIM28-209ENST00000597423 UNC80Q8N2C7 3258 aa15.02□□□□□ -0.01
TRIM28-209ENST00000597423 A0A1W2PPC4 97 aa15.01□□□□□ -0.01
TRIM28-209ENST00000597423 OR2AG2A6NM03 316 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms