RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PPP1R10Q96QC0 940 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 FIZ1Q96SL8 496 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TXN2Q99757 166 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 C1orf43Q9BWL3 253 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 PHF7Q9BWX1 381 aaPredicted RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 PACSIN1Q9BY11 444 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 INTS2Q9H0H0 1204 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 PLEKHA4Q9H4M7 779 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ZBTB26Q9HCK0 441 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS53-212ENST00000572259 EXOC1Q9NV70 894 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 MARCH5Q9NX47 278 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 EHD2Q9NZN4 543 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 CWC15Q9P013 229 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 SLC23A1Q9UHI7 598 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 KCND3Q9UK17 655 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 AURKCQ9UQB9 309 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 KCNE2Q9Y6J6 123 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 STYXL1Q9Y6J8 313 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 UBE4BO95155 1302 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 SCN1AP35498 2009 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A20PA6NIJ5 464 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ZNF233A6NK53 670 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 LACTBL1A8MY62 500 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ANKRD63C9JTQ0 380 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 PEX12O00623 359 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 IKBKBO14920 756 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SYN3O14994 580 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 MBTPS2O43462 519 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 EXTL3O43909 919 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 RTN2O75298 545 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ZNF202O95125 648 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ACO1P21399 889 aaKnown RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 ADSSP30520 456 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ACOT2P49753 483 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 CLCNKBP51801 687 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 C21orf58P58505 322 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 GMFBP60983 142 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 DMTNQ08495 405 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SGCGQ13326 291 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 FZD5Q13467 585 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 PTK6Q13882 451 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 IRF3Q14653 427 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 PSMD5Q16401 504 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 CCDC183Q5T5S1 534 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 ANKRD54Q6NXT1 300 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 DRICH1Q6PGQ1 229 aaPredicted RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 TTLL10Q6ZVT0 673 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 RABEPKQ7Z6M1 372 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 USP37Q86T82 979 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 TMEM173Q86WV6 379 aaPredicted RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 LINC00346Q8IVM7 164 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 FAM217AQ8IXS0 508 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 GPD1LQ8N335 351 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 POC5Q8NA72 575 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 MNS1Q8NEH6 495 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 HASPINQ8TF76 798 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 NOC3LQ8WTT2 800 aaKnown RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 ANKRD49Q8WVL7 239 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 MR1Q95460 341 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 PAGE5Q96GU1 130 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 VPS50Q96JG6 964 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 KLHL5Q96PQ7 755 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 WDR24Q96S15 920 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 PAIP2Q9BPZ3 127 aaKnown RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 TUBB6Q9BUF5 446 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SSBP3Q9BWW4 388 aaPredicted RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 STRA6Q9BX79 667 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 BLZF1Q9H2G9 400 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SFXN1Q9H9B4 322 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 IL21RQ9HBE5 538 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 LTB4R2Q9NPC1 389 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SLAMF7Q9NQ25 335 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 CHMP5Q9NZZ3 219 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 SLC25A10Q9UBX3 287 aaPredicted RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 CPSF3Q9UKF6 684 aaKnown RBP6.15□□□□□ -1.42
VPS53-212ENST00000572259 TCAF1Q9Y4C2 921 aa6.15□□□□□ -1.42
VPS53-212ENST00000572259 BDP1A6H8Y1 2624 aa6.15□□□□□ -1.43
VPS53-212ENST00000572259 ANK1P16157 1881 aa6.15□□□□□ -1.43
VPS53-212ENST00000572259 DOCK6Q96HP0 2047 aa6.15□□□□□ -1.43
VPS53-212ENST00000572259 FAM237AA0A1B0GTK4 181 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 hCG_1809904A0A1W2PP81 198 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 A0A1W2PPE2 198 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 A0A1W2PR64 198 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 OR2W5A6NFC9 320 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 GAGE10A6NGK3 116 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 TMEM233B4DJY2 109 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 K7ESM1 405 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 TEX28O15482 410 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LINC01565O15544 149 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 COQ9O75208 318 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 BCAS2O75934 225 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 SEC14L2O76054 403 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 SMC2O95347 1197 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 VIPP01282 170 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 TNNC2P02585 160 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 GZMAP12544 262 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LRPAP1P30533 357 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 PNPLA4P41247 253 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms