RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ATP1B2P14415 290 aaPredicted RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 OGNP20774 298 aaKnown RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 SLC1A2P43004 574 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 MAGEA4P43358 317 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 PRLHRP49683 370 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 GPX6P59796 221 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 SLC14A1Q13336 389 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 CUL1Q13616 776 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 ELOCQ15369 112 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 HSP90AA5PQ58FG0 334 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 AARS2Q5JTZ9 985 aaKnown RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 ZNF470Q6ECI4 717 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 CERS6Q6ZMG9 384 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 CILP2Q8IUL8 1156 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 SFTPA2Q8IWL1 248 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 IFT20Q8IY31 132 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 FSTL5Q8N475 847 aaPredicted RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 PYROXD1Q8WU10 500 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 TTC25Q96NG3 672 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 CAMK1GQ96NX5 476 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 FMO2Q99518 471 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 IARS2Q9NSE4 1012 aaKnown RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.46■■□□□ 1.03
SNX1-210ENST00000560260 KCNK6Q9Y257 313 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 CSNK1G3Q9Y6M4 447 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 V9GYY5 206 aaPredicted RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 ZFC3H1O60293 1989 aaKnown RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 CFAP99D6REC4 459 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 LMO7DNF2Z398 122 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 YY2O15391 372 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 SH3BP5O60239 455 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 MYBL2P10244 700 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 SSTR1P30872 391 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 THOC5Q13769 683 aaKnown RBP21.45■■□□□ 1.02
SNX1-210ENST00000560260 FRG1Q14331 258 aaKnown RBP21.45■■□□□ 1.02
SNX1-210ENST00000560260 LYPLAL1Q5VWZ2 237 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 MRNIPQ6NTE8 343 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 NAXDQ8IW45 347 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 LKAAEAR1Q8TD35 194 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 HEXDCQ8WVB3 486 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 GULP1Q9UBP9 304 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 MTRF1LQ9UGC7 380 aaKnown RBP21.45■■□□□ 1.02
SNX1-210ENST00000560260 CEP250Q9BV73 2442 aa21.45■■□□□ 1.02
SNX1-210ENST00000560260 TM4SF5O14894 197 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 KMOO15229 486 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 FLRT2O43155 660 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 RALBP11234 206 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 ZNF7P17097 686 aaPredicted RBP21.44■■□□□ 1.02
SNX1-210ENST00000560260 PBLDP30039 288 aaPredicted RBP21.44■■□□□ 1.02
SNX1-210ENST00000560260 NSG1P42857 185 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 TTPAP49638 278 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 ARHGAP8P85298 464 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 MPP1Q00013 466 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 ILF3Q12906 894 aaKnown RBP eCLIP21.44■■□□□ 1.027e-7■■■■□ 23.2
SNX1-210ENST00000560260 CTBP1Q13363 440 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 SLC30A9Q6PML9 568 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 TAF8Q7Z7C8 310 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 PIP4P1Q86T03 277 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 EID2Q8N6I1 236 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 OR4C6Q8NH72 309 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 GSDMBQ8TAX9 411 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 BAHD1Q8TBE0 780 aaPredicted RBP21.44■■□□□ 1.02
SNX1-210ENST00000560260 LPGAT1Q92604 370 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 TIMM29Q9BSF4 260 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 P2RY12Q9H244 342 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 FBXO6Q9NRD1 293 aaPredicted RBP21.44■■□□□ 1.02
SNX1-210ENST00000560260 SMYD2Q9NRG4 433 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 SPATS2LQ9NUQ6 558 aaKnown RBP21.44■■□□□ 1.02
SNX1-210ENST00000560260 MOCS1Q9NZB8 636 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 GPR34Q9UPC5 381 aa21.44■■□□□ 1.02
SNX1-210ENST00000560260 SLC30A4O14863 429 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 CBFA2T3O75081 653 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 POP7O75817 140 aaKnown RBP21.43■■□□□ 1.02
SNX1-210ENST00000560260 EML2O95834 649 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 S1PR4O95977 384 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 C1QAP02745 245 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 ANXA6P08133 673 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 ACTR1BP42025 376 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 ACTR1AP61163 376 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 LRP8Q14114 963 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 INSCQ1MX18 579 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 ZNF658BQ4V348 819 aaPredicted RBP21.43■■□□□ 1.02
SNX1-210ENST00000560260 FAM83HQ6ZRV2 1179 aaPredicted RBP21.43■■□□□ 1.02
SNX1-210ENST00000560260 GKN2Q86XP6 184 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 CNTN4Q8IWV2 1026 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 FAM167BQ9BTA0 163 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 GSDMCQ9BYG8 508 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 LRRC4CQ9HCJ2 640 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 KLC4Q9NSK0 619 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 NLGN3Q9NZ94 848 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 NINJ2Q9NZG7 142 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 TAAR2Q9P1P5 351 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 FBXO5Q9UKT4 447 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 PCOLCE2Q9UKZ9 415 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 DNAJC16Q9Y2G8 782 aa21.43■■□□□ 1.02
SNX1-210ENST00000560260 COL5A1P20908 1838 aaPredicted RBP21.43■■□□□ 1.02
SNX1-210ENST00000560260 PIKFYVEQ9Y2I7 2098 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 LY6G6EA0A0G2JKS1 128 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 SIGLEC6O43699 453 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 NDUFS3O75489 264 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms