RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TRNAU1APQ9NX07 287 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CPA4Q9UI42 421 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 FAM50BQ9Y247 325 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ERGIC3Q9Y282 383 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PCDHGA8Q9Y5G5 932 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ACTL7AQ9Y615 435 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SLC30A1Q9Y6M5 507 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 DGKBQ9Y6T7 804 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PATJQ8NI35 1801 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MYO16Q9Y6X6 1858 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 LOC285095A0A1B0GVY8 99 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TYW5A2RUC4 315 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CCDC154A6NI56 674 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SUPT3HB4E1H0 165 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TNFRSF10BO14763 440 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 GDF9O60383 454 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 NOL3O60936 208 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ECI2O75521 394 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PRSS23O95084 383 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 BCL10O95999 233 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ALBP02768 609 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ITGB1P05556 798 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 RPS17P08708 135 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 AGXTP21549 392 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 HTR1EP28566 365 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CDKN1CP49918 316 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 HK3P52790 923 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MLLT6P55198 1093 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 EEFSECP57772 596 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 KCNK10P57789 538 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 EMX2Q04743 252 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ILF2Q12905 390 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 GRIK2Q13002 908 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 LCP2Q13094 533 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ITGADQ13349 1161 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 LAPTM5Q13571 262 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TUBA3CQ13748 450 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 GALNT3Q14435 633 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MEP1AQ16819 746 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 IMPG1Q17R60 797 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CTU2Q2VPK5 515 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 AASDHQ4L235 1098 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 HABP4Q5JVS0 413 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 BRMS1LQ5PSV4 323 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SDHAF4Q5VUM1 108 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 GLYATQ6IB77 296 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SLC16A12Q6ZSM3 486 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 Q6ZSR9 355 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 RBM23Q86U06 439 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 LRRC49Q8IUZ0 686 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SPARTQ8N0X7 666 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 RHEBL1Q8TAI7 183 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 BLOC1S5Q8TDH9 187 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TRUB1Q8WWH5 349 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SLC35B4Q969S0 331 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TADA1Q96BN2 335 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MYEOVQ96EZ4 313 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF599Q96NL3 588 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CDK15Q96Q40 435 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 HBEGFQ99075 208 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TINF2Q9BSI4 451 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 AARSD1Q9BTE6 412 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TDRD1Q9BXT4 1180 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 AMBRA1Q9C0C7 1298 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CCDC68Q9H2F9 335 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SMOC2Q9H3U7 446 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TOR3AQ9H497 397 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ACTL8Q9H568 366 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 EXD2Q9NVH0 621 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PAK1IP1Q9NWT1 392 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 DNMT3BQ9UBC3 853 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 GNPTGQ9UJJ9 305 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PSME2Q9UL46 239 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 NUP214P35658 2090 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-212ENST00000552491 A0A1W2PQH9 124 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 NPEPPSL1A6NEC2 478 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 ARL5CA6NH57 179 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 TLL1O43897 1013 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 NOBOXO60393 691 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 MAN1A2O60476 641 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 VPS4BO75351 444 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 BCAS1O75363 584 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-212ENST00000552491 SLC22A3O75751 556 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 CLPXO76031 633 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 ESRRBO95718 433 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 THP07101 528 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 OR4Q2P0C623 313 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 THRBP10828 461 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 FSHRP23945 695 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 HTR1BP28222 390 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 HALP42357 657 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 HTR6P50406 440 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 RENBPP51606 427 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 ALDH3A2P51648 485 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 POLR2JP52435 117 aaKnown RBP5.36□□□□□ -1.55
LIMA1-212ENST00000552491 CRYBB1P53674 252 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-212ENST00000552491 BEX3Q00994 111 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 IFITM3Q01628 133 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 ACVR1Q04771 509 aa5.36□□□□□ -1.55
LIMA1-212ENST00000552491 DAG1Q14118 895 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms