RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRIM45Q9H8W5 580 aaPredicted RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 ZCWPW2A0A1B0GU75 182 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 FTH1P02794 183 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 FAM174BQ3ZCQ3 159 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 PKDCCQ504Y2 493 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 DSG4Q86SJ6 1040 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 CFAP206Q8IYR0 622 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 OFCC1Q8IZS5 231 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ACVR1CQ8NER5 493 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 MAGEC3Q8TD91 643 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ACTRT2Q8TDY3 377 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 SLC22A17Q8WUG5 538 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ZNF296Q8WUU4 475 aaPredicted RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 ARNTL2Q8WYA1 636 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 TSGA13Q96PP4 275 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 SMIM14Q96QK8 99 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ADGRE2Q9UHX3 823 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 RBM44Q6ZP01 1051 aaKnown RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 ZNF513Q8N8E2 541 aaPredicted RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 OLFM1Q99784 485 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ALG2Q9H553 416 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 ZBTB11O95625 1053 aaPredicted RBP14.83□□□□□ -0.03
CUX1-214ENST00000550008 ACADMP11310 421 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 DDX5P17844 614 aaKnown RBP14.83□□□□□ -0.03
CUX1-214ENST00000550008 SCAPQ12770 1279 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 CHIT1Q13231 466 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 COL9A2Q14055 689 aaPredicted RBP14.83□□□□□ -0.03
CUX1-214ENST00000550008 ZNF549Q6P9A3 640 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 EPGNQ6UW88 154 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 OR10A6Q8NH74 314 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 KLK6Q92876 244 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 KHSRPQ92945 711 aaKnown RBP eCLIP14.83□□□□□ -0.033e-6■■■■□ 19.9
CUX1-214ENST00000550008 TEX12Q9BXU0 123 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 NSUN3Q9H649 340 aaKnown RBP14.83□□□□□ -0.03
CUX1-214ENST00000550008 POLR1BQ9H9Y6 1135 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.83□□□□□ -0.03
CUX1-214ENST00000550008 TBC1D30Q9Y2I9 924 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 WNT6Q9Y6F9 365 aa14.83□□□□□ -0.03
CUX1-214ENST00000550008 NUP205Q92621 2012 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 H3BM21 787 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 CYP7B1O75881 506 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 EPHX1P07099 455 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 UROSP10746 265 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 STK19P49842 368 aaPredicted RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 ILF2Q12905 390 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 TMEM214Q6NUQ4 689 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 RTP4Q96DX8 246 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 IMP4Q96G21 291 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 ERAL1O75616 437 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 ZC3H12BQ5HYM0 836 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 C2CD4AQ8NCU7 369 aaPredicted RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 OR2T34Q8NGX1 318 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 OR2T3Q8NH03 318 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 SLC7A5P2Q9GIP4 190 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 TBC1D23Q9NUY8 699 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 IMP3Q9NV31 184 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 VPS51Q9UID3 782 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 H3BN98 237 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 SLC28A1O00337 649 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 POP4O95707 220 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 CCL5P13501 91 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 ETV4P43268 484 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 STC1P52823 247 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 CSTF3Q12996 717 aaKnown RBP14.83□□□□□ -0.04
CUX1-214ENST00000550008 ARMC6Q6NXE6 501 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.83□□□□□ -0.041e-8■■■■□ 26.3
CUX1-214ENST00000550008 TRPV1Q8NER1 839 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 MAPK15Q8TD08 544 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 IGSF21Q96ID5 467 aa14.83□□□□□ -0.04
CUX1-214ENST00000550008 RGS5O15539 181 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 RECQL5O94762 991 aaPredicted RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 CSF2RAP15509 400 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 AOC1P19801 751 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 IGFBP4P22692 258 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 NEK2P51955 445 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 GSCP56915 257 aaPredicted RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 ZNF570Q96NI8 536 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 BBS4Q96RK4 519 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 HOPXQ9BPY8 73 aaPredicted RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 SGK2Q9HBY8 427 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 ANXA6P08133 673 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 MAPK9P45984 424 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 TP53BP2Q13625 1128 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 CYP2A13Q16696 494 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 UMODL1-AS1Q8N2C9 162 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 CANT1Q8WVQ1 401 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 PAIP1Q9H074 479 aaKnown RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 REEP1Q9H902 201 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 AHSPQ9NZD4 102 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 PDLIM1O00151 329 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 FAM20BO75063 409 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 EIF2S1P05198 315 aaKnown RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 DIO3P55073 304 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 BNIP2Q12982 314 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 C16orf72Q14CZ0 275 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 KIAA1324Q6UXG2 1013 aaKnown RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 GALNT5Q7Z7M9 940 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 LIX1Q8N485 282 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 CLP1Q92989 425 aaKnown RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 DNAJC11Q9NVH1 559 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms