RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 RCBTB1Q8NDN9 531 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 ATG4AQ8WYN0 398 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 ULK4Q96C45 1275 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 EPB41L1Q9H4G0 881 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 ARNT2Q9HBZ2 717 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 CRLS1Q9UJA2 301 aa14.85□□□□□ -0.03
USP39-217ENST00000491659 OR2AG2A6NM03 316 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 LIASO43766 372 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 METTL18O95568 372 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 AP2A1O95782 977 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 HOXB3P14651 431 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 XRCC1P18887 633 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 ITGALP20701 1170 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 MPSTP25325 297 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 STIP1P31948 543 aaKnown RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 CSTF2P33240 577 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP39-217ENST00000491659 ETV5P41161 510 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 HALP42357 657 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 ZNF140P52738 457 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 UBE2IP63279 158 aaKnown RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 CXADRP78310 365 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 TMPRSS15P98073 1019 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 TMEM164Q5U3C3 297 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 AGAP9Q5VTM2 703 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 KCTD11Q693B1 232 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 DENND5AQ6IQ26 1287 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 WDR74Q6RFH5 385 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 WASH2PQ6VEQ5 465 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 ZNF574Q6ZN55 896 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 ZNF662Q6ZS27 426 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 C11orf96Q7Z7L8 435 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 LINC00523Q86TU6 105 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 AMZ2Q86W34 360 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 RASGEF1AQ8N9B8 481 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 AGBL5Q8NDL9 886 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 OR13C4Q8NGS5 318 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 CXorf40BQ96DE9 158 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 RTP4Q96DX8 246 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 ZNF514Q96K75 400 aaPredicted RBP14.84□□□□□ -0.03
USP39-217ENST00000491659 C19orf43Q9BQ61 176 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 PRORYQ9H606 182 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 WASH6PQ9NQA3 447 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 POT1Q9NUX5 634 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 KCTD3Q9Y597 815 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 CELSR3Q9NYQ7 3312 aa14.84□□□□□ -0.03
USP39-217ENST00000491659 LAMA5O15230 3695 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 ZFYVE26Q68DK2 2539 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 PRAMEF33A0A0G2JMD5 474 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 PRR19A6NJB7 356 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 NVLO15381 856 aaKnown RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 PRAMEF10O60809 474 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 IFNB1P01574 187 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 RALBP11234 206 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 RPL10P27635 214 aaKnown RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 PBLDP30039 288 aaPredicted RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 CTSCP53634 463 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 DRG2P55039 364 aaKnown RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 CCZ1BP86790 482 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 CCZ1P86791 482 aaPredicted RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 CFHR1Q03591 330 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 DMPKQ09013 629 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 SEPT6Q14141 434 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 OASLQ15646 514 aaKnown RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 TMEM220Q6QAJ8 160 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 ABRAXAS1Q6UWZ7 409 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 TMEM26Q6ZUK4 368 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 RBM12BQ8IXT5 1001 aaKnown RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 TAB3Q8N5C8 712 aaPredicted RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 TRIM58Q8NG06 486 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 NCSTNQ92542 709 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 USP7Q93009 1102 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 DCUN1D1Q96GG9 259 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 TBC1D10AQ9BXI6 508 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 UCK1Q9HA47 277 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 WDR70Q9NW82 654 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 TMEM9Q9P0T7 183 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 SCHIP1Q9P0W5 487 aaPredicted RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 ACSL6Q9UKU0 697 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 ZNF148Q9UQR1 794 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 DNMT3AQ9Y6K1 912 aaPredicted RBP14.83□□□□□ -0.04
USP39-217ENST00000491659 SLC30A1Q9Y6M5 507 aa14.83□□□□□ -0.04
USP39-217ENST00000491659 ERI2A8K979 691 aaKnown RBP14.82□□□□□ -0.04
USP39-217ENST00000491659 CFAP99D6REC4 459 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 E7EVH7 732 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 LDB2O43679 373 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 POP7O75817 140 aaKnown RBP14.82□□□□□ -0.04
USP39-217ENST00000491659 CD82P27701 267 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 MC4RP32245 332 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 CA5AP35218 305 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 FDFT1P37268 417 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 SLC19A1P41440 591 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 LMAN1P49257 510 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 XIAPP98170 497 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 CLN3Q13286 438 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 MSLNQ13421 630 aaPredicted RBP14.82□□□□□ -0.04
USP39-217ENST00000491659 SNAP47Q5SQN1 464 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 FNBP1LQ5T0N5 605 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 DET1Q7L5Y6 550 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 GPR155Q7Z3F1 870 aa14.82□□□□□ -0.04
USP39-217ENST00000491659 SNX20Q7Z614 316 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms