RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 DUSP6Q16828 381 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 TWISTNBQ3B726 338 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-211ENST00000484581 LEXMQ3ZCV2 418 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 TMEM119Q4V9L6 283 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 MTX3Q5HYI7 312 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 DCST1Q5T197 706 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 SFMBT2Q5VUG0 894 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 LCN10Q6JVE6 187 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 MIS18BP1Q6P0N0 1132 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 IRF2BP2Q7Z5L9 587 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 HOOK3Q86VS8 718 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 TIGD4Q8IY51 512 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 SYCP3Q8IZU3 236 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 SEMA6DQ8NFY4 1073 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 C9orf43Q8TAL5 461 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-211ENST00000484581 BBS10Q8TAM1 723 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 ATL1Q8WXF7 558 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 RSPH1Q8WYR4 309 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 KRT35Q92764 455 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 APBB2Q92870 758 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 EXT2Q93063 718 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 NXNL1Q96CM4 212 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 CAMK1GQ96NX5 476 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 HAUS8Q9BT25 410 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 ACAT2Q9BWD1 397 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 KCNN2Q9H2S1 579 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 RAD21L1Q9H4I0 556 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 CLK4Q9HAZ1 481 aaKnown RBP4.46□□□□□ -1.7
VPS13A-211ENST00000484581 FLRT1Q9NZU1 646 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 KCNK7Q9Y2U2 307 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 SRPRBQ9Y5M8 271 aaKnown RBP4.46□□□□□ -1.7
VPS13A-211ENST00000484581 ZNF804BA4D1E1 1349 aa4.46□□□□□ -1.7
VPS13A-211ENST00000484581 ASTN2O75129 1339 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-211ENST00000484581 LRRD1A4D1F6 860 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 OOEPA6NGQ2 149 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 TRIM77I1YAP6 450 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 PLPP2O43688 288 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 KINO60870 393 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CNOT3O75175 753 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CAMTA2O94983 1202 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 KCNK5O95279 499 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 BMP15O95972 392 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 IFNA2P01563 188 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 SNRNP70P08621 437 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 OR52Z1P0C646 297 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 FAM58BPP0C7Q3 252 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CHRNB1P11230 501 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 G6PDP11413 515 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 GNLYP22749 145 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 EEF1B2P24534 225 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 PTPN3P26045 913 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CDC25CP30307 473 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 HNRNPH1P31943 449 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 PIGAP37287 484 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ZNF75DP51815 510 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CSNK2A1P68400 391 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ID2Q02363 134 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 MZT1Q08AG7 82 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 C17orf67Q0P5P2 114 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ITGA7Q13683 1181 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 NR1D2Q14995 579 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 RRS1Q15050 365 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ZNF449Q6P9G9 518 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 FAM198BQ6UWH4 519 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 C11orf57Q6ZUT1 292 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 DET1Q7L5Y6 550 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 SHFQ7M4L6 423 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 TMEM173Q86WV6 379 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 PALB2Q86YC2 1186 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 DSELQ8IZU8 1212 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 CSNK2A3Q8NEV1 391 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 EXD1Q8NHP7 514 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 WDR20Q8TBZ3 569 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 GRAPLQ8TC17 118 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 TRIB2Q92519 343 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 SPSB1Q96BD6 273 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 GFM1Q96RP9 751 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ATP6V0BQ99437 205 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 INPP5KQ9BT40 448 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 MOV10L1Q9BXT6 1211 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 SEBOXQ9HB31 216 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 MID1IP1Q9NPA3 183 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 PDGFCQ9NRA1 345 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 TMEM51Q9NW97 253 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 OR6C3Q9NZP0 311 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 ISY1Q9ULR0 285 aaKnown RBP4.45□□□□□ -1.7
VPS13A-211ENST00000484581 NFS1Q9Y697 457 aa4.45□□□□□ -1.7
VPS13A-211ENST00000484581 C19orf81C9J6K1 198 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 SLC30A4O14863 429 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 ZNF217O75362 1048 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 LATS1O95835 1130 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 PNPP00491 289 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 PTMAP06454 111 aaKnown RBP4.44□□□□□ -1.7
VPS13A-211ENST00000484581 EEF2P13639 858 aaKnown RBP4.44□□□□□ -1.7
VPS13A-211ENST00000484581 ITGB8P26012 769 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 APOBEC1P41238 236 aaKnown RBP4.44□□□□□ -1.7
VPS13A-211ENST00000484581 MTHFRP42898 656 aa4.44□□□□□ -1.7
VPS13A-211ENST00000484581 SNRPEP62304 92 aaKnown RBP4.44□□□□□ -1.7
VPS13A-211ENST00000484581 FOXM1Q08050 763 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms