RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 FKBPLQ9UIM3 349 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 RALYQ9UKM9 306 aaKnown RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 LILRA5A6NI73 299 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 LIASO43766 372 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 METTL18O95568 372 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 AP2A1O95782 977 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 VIPP01282 170 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 THRAP10827 490 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 XRCC1P18887 633 aaPredicted RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 ITGALP20701 1170 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 SLC5A2P31639 672 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 TMPRSS3P57727 454 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 UBE2IP63279 158 aaKnown RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 CCZ1BP86790 482 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 CCZ1P86791 482 aaPredicted RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 C16orf72Q14CZ0 275 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 OASLQ15646 514 aaKnown RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 LONRF2Q1L5Z9 754 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 AGAP9Q5VTM2 703 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 DENND5AQ6IQ26 1287 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 TMEM71Q6P5X7 295 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 WDR74Q6RFH5 385 aaPredicted RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 WASH2PQ6VEQ5 465 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF574Q6ZN55 896 aaPredicted RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 C11orf96Q7Z7L8 435 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 LINC00523Q86TU6 105 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 AMZ2Q86W34 360 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 RASGEF1AQ8N9B8 481 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 TRIM58Q8NG06 486 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 ULK4Q96C45 1275 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 ASB8Q9H765 288 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 UCK1Q9HA47 277 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 WASH6PQ9NQA3 447 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 POT1Q9NUX5 634 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 CRLS1Q9UJA2 301 aa16.55■□□□□ 0.24
HMGN4-201ENST00000377575 DNMT3AQ9Y6K1 912 aaPredicted RBP16.55■□□□□ 0.24
HMGN4-201ENST00000377575 PRR19A6NJB7 356 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 OR2AG2A6NM03 316 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 ERI2A8K979 691 aaKnown RBP16.54■□□□□ 0.24
HMGN4-201ENST00000377575 AGRPO00253 132 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 NVLO15381 856 aaKnown RBP16.54■□□□□ 0.24
HMGN4-201ENST00000377575 KLK10O43240 276 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 RALBP11234 206 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 HOXB3P14651 431 aaPredicted RBP16.54■□□□□ 0.24
HMGN4-201ENST00000377575 ITIH1P19827 911 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 HALP42357 657 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 MAPK9P45984 424 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 MAPK10P53779 464 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 DMPKQ09013 629 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 MSLNQ13421 630 aaPredicted RBP16.54■□□□□ 0.24
HMGN4-201ENST00000377575 AGBL5Q8NDL9 886 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 RCBTB1Q8NDN9 531 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 OR13C4Q8NGS5 318 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 CRELD1Q96HD1 420 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 FCRL3Q96P31 734 aaPredicted RBP16.54■□□□□ 0.24
HMGN4-201ENST00000377575 ACSL6Q9UKU0 697 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF148Q9UQR1 794 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 KCTD3Q9Y597 815 aa16.54■□□□□ 0.24
HMGN4-201ENST00000377575 KLHL33A6NCF5 533 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 LDB2O43679 373 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 GAS8O95995 478 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 IFNB1P01574 187 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 RPL10P27635 214 aaKnown RBP16.53■□□□□ 0.24
HMGN4-201ENST00000377575 CSTF2P33240 577 aaKnown RBP eCLIP16.53■□□□□ 0.24
HMGN4-201ENST00000377575 FDFT1P37268 417 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 CTSCP53634 463 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 TMPRSS15P98073 1019 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 CFHR1Q03591 330 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 SEPT6Q14141 434 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 TMEM164Q5U3C3 297 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 TMEM220Q6QAJ8 160 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 ABRAXAS1Q6UWZ7 409 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 SNX20Q7Z614 316 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 RBM12BQ8IXT5 1001 aaKnown RBP16.53■□□□□ 0.24
HMGN4-201ENST00000377575 CCDC89Q8N998 374 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 HEXDCQ8WVB3 486 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 MAIP1Q8WWC4 291 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 C1orf54Q8WWF1 131 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 CXorf40BQ96DE9 158 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 DCUN1D1Q96GG9 259 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 B3GNT4Q9C0J1 378 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 PRORYQ9H606 182 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 TMEM9Q9P0T7 183 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 SCHIP1Q9P0W5 487 aaPredicted RBP16.53■□□□□ 0.24
HMGN4-201ENST00000377575 PPP2R2CQ9Y2T4 447 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 SLC30A1Q9Y6M5 507 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 LOC400499M0QZD8 3231 aa16.53■□□□□ 0.24
HMGN4-201ENST00000377575 PRAMEF33A0A0G2JMD5 474 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 CFAP99D6REC4 459 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 E7EVH7 732 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 PRAMEF10O60809 474 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 POP7O75817 140 aaKnown RBP16.52■□□□□ 0.24
HMGN4-201ENST00000377575 MPSTP25325 297 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 CD82P27701 267 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 PBLDP30039 288 aaPredicted RBP16.52■□□□□ 0.24
HMGN4-201ENST00000377575 MC4RP32245 332 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 CA5AP35218 305 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 ETV5P41161 510 aa16.52■□□□□ 0.24
HMGN4-201ENST00000377575 LMAN1P49257 510 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms