RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ARID1BQ8NFD5 2236 aaPredicted RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 LY6G6EA0A0G2JKS1 128 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 SPAARA0A1B0GVQ0 90 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 TPP1O14773 563 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 POP7O75817 140 aaKnown RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 LDOC1O95751 146 aaPredicted RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 EML2O95834 649 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 POLBP06746 335 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 RHOXF2BP0C7M4 288 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 ALPPL2P10696 532 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 PAMP19021 973 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 CSRP1P21291 193 aaKnown RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 SDHBP21912 280 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 PBLDP30039 288 aaPredicted RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 CRYMQ14894 314 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 PROX2Q3B8N5 592 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 INAVAQ3KP66 663 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 NEPROQ6NW34 567 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 LVRNQ6Q4G3 990 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 UNC5AQ6ZN44 842 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 OTUD6BQ8N6M0 293 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.57□□□□□ -0.4
SS18-202ENST00000269138 FBXO36Q8NEA4 188 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 CNDP2Q96KP4 475 aaKnown RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 APOLD1Q96LR9 279 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 RHOXF2Q9BQY4 288 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 SAYSD1Q9NPB0 183 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 C20orf96Q9NUD7 363 aaPredicted RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 ZDHHC18Q9NUE0 388 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 GULP1Q9UBP9 304 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 FTSJ1Q9UET6 329 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 ZC3H7BQ9UGR2 993 aaKnown RBP12.57□□□□□ -0.4
SS18-202ENST00000269138 U3KQA8 63 aa12.57□□□□□ -0.4
SS18-202ENST00000269138 TRBV23OR9-2A0A075B6M9 112 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 B4DGG1 531 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 CFAP99D6REC4 459 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 KCNK5O95279 499 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 ERVK-10P10266 1014 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 RALBP11234 206 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 NOVA1P51513 510 aaKnown RBP12.56□□□□□ -0.4
SS18-202ENST00000269138 CAV1Q03135 178 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 CBLBQ13191 982 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 DNAJC3Q13217 504 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 LRP8Q14114 963 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 ITIH4Q14624 930 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 TRIP6Q15654 476 aaKnown RBP12.56□□□□□ -0.4
SS18-202ENST00000269138 LONRF1Q17RB8 773 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 INSCQ1MX18 579 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 BCL7AQ4VC05 210 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 SPANXN3Q5MJ09 141 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 C6orf132Q5T0Z8 1188 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 LYPLAL1Q5VWZ2 237 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 STEAP4Q687X5 459 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 CERS6Q6ZMG9 384 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 FAM83HQ6ZRV2 1179 aaPredicted RBP12.56□□□□□ -0.4
SS18-202ENST00000269138 CENPUQ71F23 418 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 CCDC25Q86WR0 208 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 SLC35F3Q8IY50 421 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 ZBED8Q8IZ13 594 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 SDR16C5Q8N3Y7 309 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 KYQ8NBH2 561 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 GPR150Q8NGU9 434 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 HEXDCQ8WVB3 486 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 PATE1Q8WXA2 126 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 SCG3Q8WXD2 468 aaKnown RBP12.56□□□□□ -0.4
SS18-202ENST00000269138 IFT81Q8WYA0 676 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 LRRC39Q96DD0 335 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 TIMM29Q9BSF4 260 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 NAT9Q9BTE0 207 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 DUSP23Q9BVJ7 150 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 DPEP2Q9H4A9 486 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 SLC32A1Q9H598 525 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 FAM8A1Q9UBU6 413 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 TBC1D29Q9UFV1 150 aa12.56□□□□□ -0.4
SS18-202ENST00000269138 PRR19A6NJB7 356 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 NOBOXO60393 691 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 SNX2O60749 519 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 TTC4O95801 387 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 KCNA4P22459 653 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 PMLP29590 882 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 NSG1P42857 185 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 CARSP49589 748 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 CTBP1Q13363 440 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 THOC5Q13769 683 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 PUM1Q14671 1186 aaKnown RBP eCLIP12.55□□□□□ -0.4
SS18-202ENST00000269138 HSP90AA5PQ58FG0 334 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 ZNF789Q5FWF6 425 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 AARS2Q5JTZ9 985 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 MRNIPQ6NTE8 343 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 ZCCHC8Q6NZY4 707 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 TRMT10BQ6PF06 316 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 OGFOD3Q6PK18 319 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 XKR5Q6UX68 686 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 PACS1Q6VY07 963 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 AMZ2Q86W34 360 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 DENND6AQ8IWF6 608 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 LILRA3Q8N6C8 439 aaPredicted RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 FAM181AQ8N9Y4 354 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 ZDHHC1Q8WTX9 485 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 ZNF514Q96K75 400 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms