RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MED11Q9P086 117 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CLCA3PQ9Y6N3 262 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AKAP12Q02952 1782 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FUOMA2VDF0 154 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CD3EAPO15446 510 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TGM6O95932 706 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCNE2O96020 404 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ABOP16442 354 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 F8A1P23610 371 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ID1P41134 155 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UCNP55089 124 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EEF1A2Q05639 463 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TXNRD1Q16881 649 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBXO43Q4G163 708 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NET1Q7Z628 596 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PDSS2Q86YH6 399 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OR5J2Q8NH18 312 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TRPC4APQ8TEL6 797 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBXO32Q969P5 355 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TIFAQ96CG3 184 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LIN37Q96GY3 246 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM120AQ9BXJ8 343 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ELOVL4Q9GZR5 314 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAGEE1Q9HCI5 957 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBRSL1Q9HCM7 1045 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RBM22Q9NW64 420 aaKnown RBP eCLIP2.76□□□□□ -1.971e-6■■■■■ 27.8
SCN1A-219ENST00000641575 TSR3Q9UJK0 312 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHA7Q9UN72 937 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C14orf166Q9Y224 244 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 INSL6Q9Y581 213 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PTPRTO14522 1441 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PPRC1Q5VV67 1664 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LOC100653049A0A140TA62 436 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TTC26A0AVF1 554 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PLSCR5A0PG75 271 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CIB4A0PJX0 185 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HHLA1C9JL84 531 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SH2B2O14492 632 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CLOCKO15516 846 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SSX4O60224 188 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MBD4O95243 580 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PDYNP01213 254 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GHRHP01286 108 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF37AP17032 561 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ECHS1P30084 290 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RGS19P49795 217 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BCAT1P54687 386 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GHRHRQ02643 423 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EIF4A2Q14240 407 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SGO1Q5FBB7 561 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FRMD7Q6ZUT3 714 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NXPE1Q8N323 547 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC4A11Q8NBS3 891 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OR52K2Q8NGK3 314 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC5A11Q8WWX8 675 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CENPIQ92674 756 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZBED6CLQ96FA7 236 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 KIRREL1Q96J84 757 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NAT9Q9BTE0 207 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCSER1Q9C0I3 900 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RC3H2Q9HBD1 1191 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 METTL5Q9NRN9 209 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GPATCH8Q9UKJ3 1502 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CDHR2Q9BYE9 1310 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CENPEQ02224 2701 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHG1Q9ULL1 1385 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 H3BNX3 289 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 H7C2Y5 167 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 JAK2O60674 1132 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZBTB48P10074 688 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 AOAHP28039 575 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ATP5C1P36542 298 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC1A1P43005 524 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NAGLUP54802 743 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RHOAP61586 193 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RPP30P78346 268 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FPGSQ05932 587 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LAPTM5Q13571 262 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ACAP1Q15027 740 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UAP1L1Q3KQV9 507 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PAN3Q58A45 887 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LIPKQ5VXJ0 399 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GPAT2Q6NUI2 795 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CASP12Q6UXS9 341 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PTCHD4Q6ZW05 846 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FAM228AQ86W67 206 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF677Q86XU0 584 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DHRSXQ8N5I4 330 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EPS8L1Q8TE68 723 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UTP15Q8TED0 518 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PIGOQ8TEQ8 1089 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ATXN7L3BQ96GX2 97 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF594Q96JF6 807 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PSKH2Q96QS6 385 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CST11Q9H112 138 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 JPH1Q9HDC5 661 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UBE2TQ9NPD8 197 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NGRNQ9NPE2 291 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HAO1Q9UJM8 370 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms