RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SLC35E2BP0CK96 405 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 BMP1P13497 986 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 TIMP2P16035 220 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 ITGB7P26010 798 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 NTSR1P30989 418 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 WASP42768 502 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 RAB10P61026 200 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 POU4F1Q01851 419 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 CAMK2GQ13555 558 aaPredicted RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 USP10Q14694 798 aaKnown RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 FBXO43Q4G163 708 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 C2orf27AQ580R0 203 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 FAM46CQ5VWP2 391 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 SEL1L3Q68CR1 1132 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 ZNF470Q6ECI4 717 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 CAPRIN2Q6IMN6 1127 aaKnown RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 MRNIPQ6NTE8 343 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 AFTPHQ6ULP2 937 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 CRTC1Q6UUV9 634 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 PIWIL4Q7Z3Z4 852 aaKnown RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 TRMT11Q7Z4G4 463 aaKnown RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 TMEM126BQ8IUX1 230 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 ADHFE1Q8IWW8 467 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 ZNF781Q8N8C0 355 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 C2CD4AQ8NCU7 369 aaPredicted RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 OR4L1Q8NH43 312 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 SUDS3Q9H7L9 328 aaPredicted RBP11.6□□□□□ -0.55
VRK3-223ENST00000601341 BPIFA1Q9NP55 256 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 DYRK4Q9NR20 520 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 BCAP29Q9UHQ4 241 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 FBXO5Q9UKT4 447 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 SARDHQ9UL12 918 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 SLC39A10Q9ULF5 831 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 TICRRQ7Z2Z1 1910 aa11.6□□□□□ -0.55
VRK3-223ENST00000601341 A8MX80 341 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 H7C0S8 307 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 MAN2B1O00754 1011 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 CD3EAPO15446 510 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 CLDN7O95471 211 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 COX4I1P13073 169 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 STMN1P16949 149 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ZNF30P17039 623 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 VIPR1P32241 457 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SLC26A3P40879 764 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SLC1A2P43004 574 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SUOXP51687 545 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 PTPN5P54829 565 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 MRPS21P82921 87 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 SATB1Q01826 763 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 GALNT1Q10472 559 aaPredicted RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 KLF10Q13118 480 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 CTBP1Q13363 440 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ARHGEF7Q14155 803 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 STARD3Q14849 445 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 LRRC66Q68CR7 880 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ERAP2Q6P179 960 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 NAPRTQ6XQN6 538 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ATG14Q6ZNE5 492 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ACAD11Q709F0 780 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 RAPH1Q70E73 1250 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SDCCAG8Q86SQ7 713 aaPredicted RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 CILP2Q8IUL8 1156 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 MMAAQ8IVH4 418 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 DENND6AQ8IWF6 608 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 GPR150Q8NGU9 434 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 RP9Q8TA86 221 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 FAM3CQ92520 227 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 EID2BQ96D98 161 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 FAR2Q96K12 515 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SERPINI1Q99574 410 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 MRPL57Q9BQC6 102 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 PCDH12Q9NPG4 1184 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 CATSPERZQ9NTU4 200 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 SPATS2LQ9NUQ6 558 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 ZNF358Q9NW07 568 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 B4GALT6Q9UBX8 382 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 FKBPLQ9UIM3 349 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 A0A0U1RQS6 177 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 RGSL1A5PLK6 1076 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 AHSGP02765 367 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 MTTPP55157 894 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 POM121L1PQ3SYA9 428 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 IER5LQ5T953 404 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 ZDHHC20Q5W0Z9 365 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 FBXL19Q6PCT2 694 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 C16orf89Q6UX73 402 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 PARS2Q7L3T8 475 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 TSPAN33Q86UF1 283 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 CENPLQ8N0S6 344 aaPredicted RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 CBARPQ8N350 705 aaPredicted RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 FBXW8Q8N3Y1 598 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 IL17RCQ8NAC3 791 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 PBXIP1Q96AQ6 731 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 GABRG3Q99928 467 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 RSPH9Q9H1X1 276 aaPredicted RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 MRPL46Q9H2W6 279 aaKnown RBP11.59□□□□□ -0.55
VRK3-223ENST00000601341 FBRSQ9HAH7 460 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 S100A14Q9HCY8 104 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 NCKIPSDQ9NZQ3 722 aa11.59□□□□□ -0.55
VRK3-223ENST00000601341 APPL1Q9UKG1 709 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms