RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TRPV4Q9HBA0 871 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 S100A14Q9HCY8 104 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PNPOQ9NVS9 261 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PKD2L2Q9NZM6 624 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 WNT6Q9Y6F9 365 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 MKI67P46013 3256 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TSPAN11A1L157 253 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF195O14628 629 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 PER2O15055 1255 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ARHGEF15O94989 841 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ALPIP09923 528 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 MYOGP15173 224 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 GMPRP36959 345 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CTSOP43234 321 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-229ENST00000557348 RGS4P49798 205 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CHN2P52757 468 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CDKN3Q16667 212 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF697Q5TEC3 545 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 DPY19L3Q6ZPD9 716 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ALYREFQ86V81 257 aaKnown RBP12.53□□□□□ -0.4
SHMT2-229ENST00000557348 PIM3Q86V86 326 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 PIANPQ8IYJ0 282 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ULK2Q8IYT8 1036 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 PHC3Q8NDX5 983 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 VN1R2Q8NFZ6 395 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 OR6K2Q8NGY2 324 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 RIN3Q8TB24 985 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ANKRD49Q8WVL7 239 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ING5Q8WYH8 240 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CMTM5Q96DZ9 223 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ZSWIM3Q96MP5 696 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 P2RY12Q9H244 342 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 LINC00597Q9H2U6 94 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 ASB8Q9H765 288 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 BPIFA1Q9NP55 256 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 TCF7L2Q9NQB0 619 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 GALNT8Q9NY28 637 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 C6orf203Q9P0P8 240 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CRLS1Q9UJA2 301 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 CDYLQ9Y232 598 aa12.53□□□□□ -0.4
SHMT2-229ENST00000557348 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 RGSL1A5PLK6 1076 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 AGAP14A8MT82 685 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 STX16-NPEPL1H3BU86 382 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 EIF3FO00303 357 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 STX16O14662 325 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ZBTB14O43829 449 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 CYP17A1P05093 508 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 FSHRP23945 695 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ACRV1P26436 265 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ARRB2P32121 409 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ALDH18A1P54886 795 aaKnown RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 TIAL1Q01085 375 aaKnown RBP eCLIP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 BTKQ06187 659 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 TUBB3Q13509 450 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 EML3Q32P44 896 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 HSF5Q4G112 596 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 C9orf50Q5SZB4 431 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 C1orf146Q5VVC0 180 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 PTRHD1Q6GMV3 140 aaKnown RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ASTLQ6HA08 431 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 TMEM207Q6UWW9 146 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 RIPOR1Q6ZS17 1223 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 ADAMTSL2Q86TH1 951 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 RBM23Q86U06 439 aaKnown RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 CHCHD4Q8N4Q1 142 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 PBXIP1Q96AQ6 731 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 GPR21Q99679 349 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 CCDC106Q9BWC9 280 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 MRPS26Q9BYN8 205 aaKnown RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 PFDN4Q9NQP4 134 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 NFKBIL1Q9UBC1 381 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-229ENST00000557348 DKK3Q9UBP4 350 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 RAB26Q9ULW5 256 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 RNF112Q9ULX5 631 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 FAM50BQ9Y247 325 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 DHRS7Q9Y394 339 aa12.52□□□□□ -0.4
SHMT2-229ENST00000557348 CLDN7O95471 211 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CHRNGP07510 517 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CHRM3P20309 590 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MPSTP25325 297 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NSG1P42857 185 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NRIP1P48552 1158 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 DCDC1P59894 354 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 KCNC3Q14003 757 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ARHGEF7Q14155 803 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SPIDRQ14159 915 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SHHQ15465 462 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 TTLL9Q3SXZ7 439 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CTSL3PQ5NE16 218 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF678Q5SXM1 525 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 PPP2R2DQ66LE6 453 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 PAQR3Q6TCH7 311 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 FAM151BQ6UXP7 276 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 Q6ZVU0 165 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 EFL1Q7Z2Z2 1120 aaKnown RBP12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SERPINA9Q86WD7 417 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NPAS3Q8IXF0 933 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SPATA6LQ8N4H0 392 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms