RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 APPL1Q9UKG1 709 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 PACSIN3Q9UKS6 424 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 NOTCH4Q99466 2003 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 IQCF5A8MTL0 148 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 E5RI56 91 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 BPIP17213 487 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 GJA1P17302 382 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 ACRV1P26436 265 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 PTPN5P54829 565 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 PKNOX1P55347 436 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 GRB7Q14451 532 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 TGFBIQ15582 683 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 TPGS1Q6ZTW0 290 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 ELMOD1Q8N336 334 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 ARMC5Q96C12 935 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 SEMA4BQ9NPR2 832 aaPredicted RBP13.63□□□□□ -0.23
RTN3-210ENST00000540798 ASAH2Q9NR71 780 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 SUCOQ9UBS9 1254 aaKnown RBP13.63□□□□□ -0.23
RTN3-210ENST00000540798 PSMD13Q9UNM6 376 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 C1orf232A0A0U1RR37 186 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 BBIP1A8MTZ0 92 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 PEX1O43933 1283 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 NRP2O60462 931 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CLDN7O95471 211 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 ZNF7P17097 686 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 HLA-FP30511 346 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CTSOP43234 321 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 PCBP2Q15366 365 aaKnown RBP eCLIP13.62□□□□□ -0.233e-35■■■■■ 31.2
RTN3-210ENST00000540798 PAOXQ6QHF9 649 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SBSNQ6UWP8 590 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 FAM151BQ6UXP7 276 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 IZUMO2Q6UXV1 221 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 PDSS2Q86YH6 399 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 RBFAQ8N0V3 343 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 RIN3Q8TB24 985 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 GCNAQ96QF7 691 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 TNKS2Q9H2K2 1166 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SLC52A3Q9NQ40 469 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SDR39U1Q9NRG7 319 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 CD300AQ9UGN4 299 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 BCAP29Q9UHQ4 241 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 ASB1Q9Y576 335 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 GOLGA8CPA6NN73 597 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 MOSPD3O75425 235 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 UROSP10746 265 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SERPINA4P29622 427 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 FLOT2Q14254 428 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 FUT11Q495W5 492 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 ZFP1Q6P2D0 407 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 OTOP2Q7RTS6 562 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 EFL1Q7Z2Z2 1120 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 TMEM126BQ8IUX1 230 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 OR9I1Q8NGQ6 314 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 DLG3Q92796 817 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 ASB9Q96DX5 294 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 ZNF382Q96SR6 550 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CORO1BQ9BR76 489 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CPEB1Q9BZB8 566 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 MRPL40Q9NQ50 206 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 C6orf203Q9P0P8 240 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 TMEM181Q9P2C4 612 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 GNPTGQ9UJJ9 305 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 FNDC3AQ9Y2H6 1198 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 CFLARO15519 480 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CAPNS1P04632 268 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 LBPP18428 481 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 PRDX3P30048 256 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 GSTA3Q16772 222 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 EML3Q32P44 896 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 GPR33Q49SQ1 333 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 OGFRL1Q5TC84 451 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 MACC1Q6ZN28 852 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CMTM8Q8IZV2 173 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 OR56A4Q8NGH8 313 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 LKAAEAR1Q8TD35 194 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SP7Q8TDD2 431 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 ROPN1LQ96C74 230 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 MCCC1Q96RQ3 725 aaPredicted RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 GPATCH1Q9BRR8 931 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 BOCQ9BWV1 1114 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 SMG9Q9H0W8 520 aaKnown RBP13.62□□□□□ -0.23
RTN3-210ENST00000540798 LATS2Q9NRM7 1088 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 LZTS1Q9Y250 596 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 CCL26Q9Y258 94 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 PRSS21Q9Y6M0 314 aa13.62□□□□□ -0.23
RTN3-210ENST00000540798 DOCK6Q96HP0 2047 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 E7ENX8 843 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 ITGALP20701 1170 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 DDX6P26196 483 aaKnown RBP eCLIP13.61□□□□□ -0.23
RTN3-210ENST00000540798 STX1BP61266 288 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 SNRPD1P62314 119 aaKnown RBP13.61□□□□□ -0.23
RTN3-210ENST00000540798 GRIK2Q13002 908 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 MYLK3Q32MK0 819 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 ASTLQ6HA08 431 aaPredicted RBP13.61□□□□□ -0.23
RTN3-210ENST00000540798 GRAMD4Q6IC98 578 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 RTL10Q7L3V2 364 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 SPATA19Q7Z5L4 167 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 ADAMTSL2Q86TH1 951 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 PDPRQ8NCN5 879 aa13.61□□□□□ -0.23
RTN3-210ENST00000540798 HIPK4Q8NE63 616 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 212 ms