RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FAM46DQ8NEK8 389 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TOR1AIP2Q8NFQ8 470 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 FRS2Q8WU20 508 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ALG14Q96F25 216 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 RUNDC3BQ96NL0 473 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SYT11Q9BT88 431 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 VPS37BQ9H9H4 285 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PRMT8Q9NR22 394 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SEPT3Q9UH03 358 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC6A14Q9UN76 642 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 FLNBO75369 2602 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 GMNCA6NCL1 334 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 A8MU76 341 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF185O15231 689 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TM7SF2O76062 418 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 RECQL5O94762 991 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CELA2BP08218 269 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CCDC159P0C7I6 412 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 NFKB1P19838 968 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 C5AR1P21730 350 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 AK4P27144 223 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 VAV2P52735 878 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 PPP2R2AP63151 447 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 BYSLQ13895 437 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TEAD4Q15561 434 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CCNG2Q16589 344 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 MPP7Q5T2T1 576 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ERAP2Q6P179 960 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CES3Q6UWW8 571 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TAF8Q7Z7C8 310 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC35F6Q8N357 371 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CCL4L1Q8NHW4 92 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 OLIG1Q8TAK6 271 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ACMSDQ8TDX5 336 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 KCTD4Q8WVF5 259 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 PATE1Q8WXA2 126 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 SH3KBP1Q96B97 665 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 RNF157Q96PX1 679 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 IL12RB2Q99665 862 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 GABRG3Q99928 467 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 OSBPL8Q9BZF1 889 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 PSMD13Q9UNM6 376 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ARHGEF17Q96PE2 2063 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 METTL12A8MUP2 240 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 KDELR3O43731 214 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM127O75204 238 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CD160O95971 181 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 UBL4AP11441 157 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 PAFAH1B1P43034 410 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 AKR1D1P51857 326 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 SESN2P58004 480 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 E2F2Q14209 437 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 RPS6KA1Q15418 735 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TTC39BQ5VTQ0 682 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ARHGAP12Q8IWW6 846 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ARFGAP2Q8N6H7 521 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 NELL1Q92832 810 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 MSANTD3Q96H12 275 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CITED4Q96RK1 184 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 CCDC28BQ9BUN5 200 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 ADNPQ9H2P0 1102 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM124BQ9H5Z6 455 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 MARCH7Q9H992 704 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 GDF3Q9NR23 364 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 GID8Q9NWU2 228 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 PLEKHM1Q9Y4G2 1056 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 FADS3Q9Y5Q0 445 aa7.84□□□□□ -1.15
LIMCH1-219ENST00000514096 TCRBV5S1A1TA0A578 114 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 GRID2IPA4D2P6 1211 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 FBP2O00757 339 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 ARHGAP33O14559 1287 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A9O60656 530 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 FGGP02679 453 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 SERPINF2P08697 491 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 JUNDP17535 347 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A6P19224 532 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A1P22309 533 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A4P22310 534 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 S100A5P33763 92 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A3P35503 534 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A5P35504 534 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 GPR1P46091 355 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 RPL34P49207 117 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 TRAF2Q12933 501 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 POU6F1Q14863 301 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 SEL1L2Q5TEA6 688 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 AGBL4Q5VU57 503 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 WDR5BQ86VZ2 330 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 VSIG1Q86XK7 387 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UBL4BQ8N7F7 174 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 OR2T34Q8NGX1 318 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 ATP6V1E2Q96A05 226 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 TTC17Q96AE7 1141 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 C1orf74Q96LT6 269 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 SPATA16Q9BXB7 569 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A7Q9HAW7 530 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A10Q9HAW8 530 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 UGT1A8Q9HAW9 530 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 VPS45Q9NRW7 570 aa7.83□□□□□ -1.16
LIMCH1-219ENST00000514096 KCND1Q9NSA2 647 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms