RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 FAM26DQ5JW98 314 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ZNF678Q5SXM1 525 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 IL23RQ5VWK5 629 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ANO7Q6IWH7 933 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 FAM180BQ6P0A1 224 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 FBXO30Q8TB52 745 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 POF1BQ8WVV4 589 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ATP13A3Q9H7F0 1226 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 FARSBQ9NSD9 589 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SLAMF8Q9P0V8 285 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 STX18Q9P2W9 335 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 U3KQV3 271 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 NRG2O14511 850 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 TBC1D4O60343 1298 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 CPSF4O95639 269 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 GBAP04062 536 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC20A2Q08357 652 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 TUBB3Q13509 450 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 CCNIQ14094 377 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SERPINA13PQ6UXR4 307 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 GPRIN3Q6ZVF9 776 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC44A2Q8IWA5 706 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 LKAAEAR1Q8TD35 194 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ELMO1Q92556 727 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 CCDC126Q96EE4 140 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 EBPLQ9BY08 206 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 KLHL4Q9C0H6 718 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SOX17Q9H6I2 414 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 VTI1BQ9UEU0 232 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ADH1AP07327 375 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 LBPP18428 481 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 RPL10P27635 214 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 CYP51A1Q16850 503 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ATP6AP1LQ52LC2 224 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 ARSIQ5FYB1 569 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 RARS2Q5T160 578 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 CLEC14AQ86T13 490 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 FAM110BQ8TC76 370 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 NMD3Q96D46 503 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 GPR78Q96P69 363 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 PRPF18Q99633 342 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC25A13Q9UJS0 675 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 PSMD13Q9UNM6 376 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 PRKG2Q13237 762 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 DGKKQ5KSL6 1271 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 TBCELQ5QJ74 424 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 KIAA0408Q6ZU52 694 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 ADCK2Q7Z695 626 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 TRAPPC5Q8IUR0 188 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 RP9Q8TA86 221 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 AURKBQ96GD4 344 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 RNF145Q96MT1 663 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PPP1R2P1Q96PQ5 205 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 ECSITQ9BQ95 431 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 ARID1BQ8NFD5 2236 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PRLP01236 227 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 CHRM1P11229 460 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 IMPDH1P20839 514 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PREPP48147 710 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 ST8SIA6P61647 398 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PTGR1Q14914 329 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 TAF1AQ15573 450 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 TBCCQ15814 346 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PHKG1Q16816 387 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PLEKHG6Q3KR16 790 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC8B1Q6J4K2 584 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 CXorf57Q6NSI4 855 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 CHST9Q7L1S5 443 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 PCYOX1LQ8NBM8 494 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 OSGEPL1Q9H4B0 414 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 OPTCQ9UBM4 332 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 TBC1D3BA6NDS4 549 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 SAP18O00422 153 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 LZTS3O60299 673 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 CA5AP35218 305 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 WDR5P61964 334 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 HERVK_113P63132 956 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 GK3PQ14409 553 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 ERVK-6Q9BXR3 956 aa13.59□□□□□ -0.23
CCDC88A-211ENST00000471947 NPIPB15A6NHN6 443 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CCDC154A6NI56 674 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TTC34A8MYJ7 566 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 H2AFYO75367 372 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 FGBP02675 491 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TYRP14679 529 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 ATP6V1C1P21283 382 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 DPP6P42658 865 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TNK2Q07912 1038 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CNKSR3Q6P9H4 555 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC2A7Q6PXP3 512 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CYS1Q717R9 158 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 GET4Q7L5D6 327 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TRMT11Q7Z4G4 463 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 PARP8Q8N3A8 854 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM199Q8N511 208 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 OR56A4Q8NGH8 313 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TOP1MTQ969P6 601 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 MTERF1Q99551 399 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 RTKNQ9BST9 563 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CWH43Q9H720 699 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms