RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ADRA1AP35348 466 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 CXADRP78310 365 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 TMEM115Q12893 351 aaPredicted RBP20.93■□□□□ 0.94
HMGB3-205ENST00000455596 TRA2AQ13595 282 aaKnown RBP eCLIP20.93■□□□□ 0.94
HMGB3-205ENST00000455596 ITGA9Q13797 1035 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 C16orf72Q14CZ0 275 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 CHRNA6Q15825 494 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 KHDC1Q4VXA5 237 aaKnown RBP20.93■□□□□ 0.94
HMGB3-205ENST00000455596 HES6Q96HZ4 224 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 CCDC74BQ96LY2 380 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 TTC25Q96NG3 672 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 TIMM29Q9BSF4 260 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 TSGA10Q9BZW7 698 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 ZCCHC2Q9C0B9 1178 aaKnown RBP20.93■□□□□ 0.94
HMGB3-205ENST00000455596 PRDM8Q9NQV8 689 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.93■□□□□ 0.94
HMGB3-205ENST00000455596 SLC23A2Q9UGH3 650 aa20.93■□□□□ 0.94
HMGB3-205ENST00000455596 C2orf81A6NN90 581 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 NVLO15381 856 aaKnown RBP20.92■□□□□ 0.94
HMGB3-205ENST00000455596 HOXB3P14651 431 aaPredicted RBP20.92■□□□□ 0.94
HMGB3-205ENST00000455596 LPOP22079 712 aaPredicted RBP20.92■□□□□ 0.94
HMGB3-205ENST00000455596 CSF2RBP32927 897 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 MAPK10P53779 464 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 NFATC2Q13469 925 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 TAF1AQ15573 450 aaPredicted RBP20.92■□□□□ 0.94
HMGB3-205ENST00000455596 LDLRAP1Q5SW96 308 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 TMEM71Q6P5X7 295 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 GPR155Q7Z3F1 870 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 ZNF547Q8IVP9 402 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 RCBTB1Q8NDN9 531 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 LRRC45Q96CN5 670 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 APOL2Q9BQE5 337 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.92■□□□□ 0.94
HMGB3-205ENST00000455596 CPNE7Q9UBL6 633 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 ACSL6Q9UKU0 697 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 DNAJC16Q9Y2G8 782 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 ARL5AQ9Y689 179 aa20.92■□□□□ 0.94
HMGB3-205ENST00000455596 C5orf60A6NFR6 353 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 KRT86O43790 486 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A9O60656 530 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A6P19224 532 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A1P22309 533 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A4P22310 534 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A3P35503 534 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 ETV5P41161 510 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 EPHA4P54764 986 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 CFHR1Q03591 330 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 KLF1Q13351 362 aaPredicted RBP20.91■□□□□ 0.94
HMGB3-205ENST00000455596 OLIG2Q13516 323 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 TRAPPC5Q8IUR0 188 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A7Q9HAW7 530 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A10Q9HAW8 530 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 UGT1A8Q9HAW9 530 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 PTPRQQ9UMZ3 2332 aa20.91■□□□□ 0.94
HMGB3-205ENST00000455596 LAMA5O15230 3695 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 GPR39O43194 453 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 THRAP10827 490 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 VCLP18206 1134 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 XRCC1P18887 633 aaPredicted RBP20.9■□□□□ 0.94
HMGB3-205ENST00000455596 CLN3Q13286 438 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 PTPRCAPQ14761 206 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 SOWAHCQ53LP3 525 aaPredicted RBP20.9■□□□□ 0.94
HMGB3-205ENST00000455596 ARHGEF18Q6ZSZ5 1173 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 DDHD1Q8NEL9 900 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 OR4K2Q8NGD2 314 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 USP7Q93009 1102 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 UBL7Q96S82 380 aaPredicted RBP20.9■□□□□ 0.94
HMGB3-205ENST00000455596 TBL1YQ9BQ87 522 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 CPNE5Q9HCH3 593 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 TMEM9Q9P0T7 183 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 GUCA1BQ9UMX6 200 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 SSUH2Q9Y2M2 353 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 ITPR1Q14643 2758 aa20.9■□□□□ 0.94
HMGB3-205ENST00000455596 PRAMEF33A0A0G2JMD5 474 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 TEX51A0A1B0GUA7 166 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 PDZK1P1A8MUH7 402 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 GAPDHSO14556 408 aaPredicted RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 PRAMEF10O60809 474 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 PRAMEF1O95521 474 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 CRTAMO95727 393 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 IDSP22304 550 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 MPSTP25325 297 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 UBE2IP63279 158 aaKnown RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 PDE1BQ01064 536 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 SEPT7Q16181 437 aaKnown RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 PARP6Q2NL67 630 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 SEL1L2Q5TEA6 688 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 TMEM164Q5U3C3 297 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 WDR74Q6RFH5 385 aaPredicted RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 C11orf96Q7Z7L8 435 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 TRIM48Q8IWZ4 208 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 FAM71DQ8N9W8 422 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 AGBL5Q8NDL9 886 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 ZNF398Q8TD17 642 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 UBE2Q2Q8WVN8 375 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 B3GNT4Q9C0J1 378 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 EPB41L1Q9H4G0 881 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 SMOXQ9NWM0 555 aa20.89■□□□□ 0.93
HMGB3-205ENST00000455596 SCHIP1Q9P0W5 487 aaPredicted RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 FEZ2Q9UHY8 353 aaPredicted RBP20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms