RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PIEZO2Q9H5I5 2752 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 OR5K4A6NMS3 321 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 A8MU76 341 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 H7C0C1 242 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 KMOO15229 486 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 AGTP01019 485 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 CSTF2P33240 577 aaKnown RBP eCLIP20.45■□□□□ 0.86
SDC1-205ENST00000447124 ATP5OP48047 213 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 COPS2P61201 443 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 TMEM115Q12893 351 aaPredicted RBP20.45■□□□□ 0.86
SDC1-205ENST00000447124 MPP3Q13368 585 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 PTPRCAPQ14761 206 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 CHRNA6Q15825 494 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 SNAP47Q5SQN1 464 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 WDR74Q6RFH5 385 aaPredicted RBP20.45■□□□□ 0.86
SDC1-205ENST00000447124 C11orf96Q7Z7L8 435 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 VASH2Q86V25 355 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 LRRTM4Q86VH4 590 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 PHYKPLQ8IUZ5 450 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 BMPERQ8N8U9 685 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 ACRBPQ8NEB7 543 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 ACTL9Q8TC94 416 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 NCSTNQ92542 709 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 SH3KBP1Q96B97 665 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 OSBPL8Q9BZF1 889 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 OSGEPL1Q9H4B0 414 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 RSPH14Q9UHP6 348 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 DNAJC16Q9Y2G8 782 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 B3GALT1Q9Y5Z6 326 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 SDK2Q58EX2 2172 aa20.45■□□□□ 0.86
SDC1-205ENST00000447124 BTNL10A8MVZ5 291 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 GAPDHSO14556 408 aaPredicted RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 GPR39O43194 453 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 DUX1O43812 170 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 VEGFDO43915 354 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 SLC2A4P14672 509 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 BRAFP15056 766 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 XRCC1P18887 633 aaPredicted RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 CTNNA2P26232 953 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 CD82P27701 267 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 OTUD4Q01804 1114 aaKnown RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 LY6DQ14210 128 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 TMEM164Q5U3C3 297 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 DTX3LQ8TDB6 740 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 BLOC1S5Q8TDH9 187 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 JPH3Q8WXH2 748 aaPredicted RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 ALG3Q92685 438 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 ART4Q93070 314 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 FAM118BQ9BPY3 351 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 LUC7LQ9NQ29 371 aaKnown RBP20.44■□□□□ 0.86
SDC1-205ENST00000447124 SLC39A1Q9NY26 324 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 EFR3BQ9Y2G0 817 aa20.44■□□□□ 0.86
SDC1-205ENST00000447124 COL6A6A6NMZ7 2263 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 EFCAB7A8K855 629 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 B4E171 279 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 PJA2O43164 708 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 PYGMP11217 842 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 HLA-DPA1P20036 260 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 TSPAN7P41732 249 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 MAPK9P45984 424 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 PPM1FP49593 454 aaPredicted RBP20.43■□□□□ 0.86
SDC1-205ENST00000447124 EPHA4P54764 986 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 NAP1L1P55209 391 aaKnown RBP20.43■□□□□ 0.86
SDC1-205ENST00000447124 OLIG2Q13516 323 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 INSCQ1MX18 579 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 MANEAQ5SRI9 462 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 ABRAXAS1Q6UWZ7 409 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 LRRC57Q8N9N7 239 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 TIMM29Q9BSF4 260 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 OGFRQ9NZT2 677 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 HACD3Q9P035 362 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 SLC30A1Q9Y6M5 507 aa20.43■□□□□ 0.86
SDC1-205ENST00000447124 HELZ2Q9BYK8 2649 aaKnown RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 A0A0U1RQJ8 604 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 GRID2IPA4D2P6 1211 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 RPL10P27635 214 aaKnown RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 PTPN7P35236 360 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 ADRA1AP35348 466 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 SPAM1P38567 509 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 MSLNQ13421 630 aaPredicted RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 LINC00303Q3SY05 128 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 FAM151BQ6UXP7 276 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 RANBP10Q6VN20 620 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 TMEM26Q6ZUK4 368 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 RASGEF1AQ8N9B8 481 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 NKD1Q969G9 470 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 SGF29Q96ES7 293 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 CALR3Q96L12 384 aaKnown RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 FICDQ9BVA6 458 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 SPRY4Q9C004 299 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 GBA3Q9H227 469 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 STN1Q9H668 368 aaKnown RBP20.42■□□□□ 0.86
SDC1-205ENST00000447124 UCK1Q9HA47 277 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 TRIM10Q9UDY6 481 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 WDR37Q9Y2I8 494 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 PCDHB11Q9Y5F2 797 aa20.42■□□□□ 0.86
SDC1-205ENST00000447124 ZNF462Q96JM2 2506 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 LILRA5A6NI73 299 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms