RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 UBE2IP63279 158 aaKnown RBP18.78■□□□□ 0.6
SF3A1-202ENST00000411423 XIAPP98170 497 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 HHEXQ03014 270 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 NFATC2Q13469 925 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PEX6Q13608 980 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 TAF1AQ15573 450 aaPredicted RBP18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PHF19Q5T6S3 580 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 GPRC6AQ5T6X5 926 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 MEI1Q5TIA1 1274 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 LRRC69Q6ZNQ3 347 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PRUNE1Q86TP1 453 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PIM3Q86V86 326 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 LRRC8AQ8IWT6 810 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 CCDC74BQ96LY2 380 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 TSGA10Q9BZW7 698 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 STRADBQ9C0K7 418 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 OSGEPL1Q9H4B0 414 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PRORYQ9H606 182 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 SARS2Q9NP81 518 aaKnown RBP18.78■□□□□ 0.6
SF3A1-202ENST00000411423 KCNK4Q9NYG8 393 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 PISDQ9UG56 409 aa18.78■□□□□ 0.6
SF3A1-202ENST00000411423 GOLGA6L9A6NEM1 432 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 GOLGA6L6A8MZA4 724 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 KMOO15229 486 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 STX7O15400 261 aaKnown RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 KRT86O43790 486 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 STK10O94804 968 aaKnown RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 CCL4P13236 92 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 LPOP22079 712 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 TNNT3P45378 269 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 ZNF140P52738 457 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 LIMK2P53671 638 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 SQSTM1Q13501 440 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 PRPSAP1Q14558 356 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 SIX1Q15475 284 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 OASLQ15646 514 aaKnown RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 SEPT7Q16181 437 aaKnown RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 INSCQ1MX18 579 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 PARP6Q2NL67 630 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 XKR5Q6UX68 686 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 SLC13A5Q86YT5 568 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 DDHD1Q8NEL9 900 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 GDAP1Q8TB36 358 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 PMEPA1Q969W9 287 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 BBC3Q96PG8 261 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 FERMT1Q9BQL6 677 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 TIMM29Q9BSF4 260 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 TBC1D10AQ9BXI6 508 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 ARNT2Q9HBZ2 717 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 LZTFL1Q9NQ48 299 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 PIH1D1Q9NWS0 290 aaKnown RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 ZNF624Q9P2J8 865 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-202ENST00000411423 WDR37Q9Y2I8 494 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 PKP3Q9Y446 797 aa18.77■□□□□ 0.6
SF3A1-202ENST00000411423 TMX2-CTNND1H3BSU7 103 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 LDB2O43679 373 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 LIASO43766 372 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 PRAMEF1O95521 474 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 PTMAP06454 111 aaKnown RBP18.76■□□□□ 0.59
SF3A1-202ENST00000411423 THRAP10827 490 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 TPH1P17752 444 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 RPL10P27635 214 aaKnown RBP18.76■□□□□ 0.59
SF3A1-202ENST00000411423 SLC5A2P31639 672 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 SLC19A1P41440 591 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 TMPRSS15P98073 1019 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 EIF3IQ13347 325 aaKnown RBP18.76■□□□□ 0.59
SF3A1-202ENST00000411423 BIRC2Q13490 618 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 KCTD19Q17RG1 926 aaPredicted RBP18.76■□□□□ 0.59
SF3A1-202ENST00000411423 ZDHHC20Q5W0Z9 365 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 FAM83HQ6ZRV2 1179 aaPredicted RBP18.76■□□□□ 0.59
SF3A1-202ENST00000411423 ARHGEF18Q6ZSZ5 1173 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 TRAPPC5Q8IUR0 188 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 GLIS1Q8NBF1 620 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 ZNF398Q8TD17 642 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 BRSK1Q8TDC3 778 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 C1orf54Q8WWF1 131 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 KCNE4Q8WWG9 221 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 RTP4Q96DX8 246 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 SLC38A3Q99624 504 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 SMOXQ9NWM0 555 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.76■□□□□ 0.598e-10■■■■■ 31.5
SF3A1-202ENST00000411423 FOXJ2Q9P0K8 574 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 CPNE7Q9UBL6 633 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 SSUH2Q9Y2M2 353 aa18.76■□□□□ 0.59
SF3A1-202ENST00000411423 OR2AG2A6NM03 316 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 C9orf172C9J069 976 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 KLK10O43240 276 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 SGTAO43765 313 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 SRP72O76094 671 aaKnown RBP18.75■□□□□ 0.59
SF3A1-202ENST00000411423 PRSS56P0CW18 603 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 ETS1P14921 441 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 ARSDP51689 593 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 DRG2P55039 364 aaKnown RBP18.75■□□□□ 0.59
SF3A1-202ENST00000411423 SRSF6Q13247 344 aaKnown RBP18.75■□□□□ 0.59
SF3A1-202ENST00000411423 CLN3Q13286 438 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 CLCA4Q14CN2 919 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 SEL1L2Q5TEA6 688 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 ZNF662Q6ZS27 426 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 SLC9B2Q86UD5 537 aa18.75■□□□□ 0.59
SF3A1-202ENST00000411423 BEND7Q8N7W2 519 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 436.6 ms