RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 STRCP1A6NGW2 1772 aa11.76□□□□□ -0.53
CCDC47-207ENST00000612558 NEFLP07196 543 aa11.75□□□□□ -0.53
CCDC47-207ENST00000612558 ZSWIM6Q9HCJ5 1215 aa11.75□□□□□ -0.53
CCDC47-207ENST00000612558 SUPT16HQ9Y5B9 1047 aaKnown RBP11.75□□□□□ -0.53
CCDC47-207ENST00000612558 EMILIN1Q9Y6C2 1016 aa11.75□□□□□ -0.53
CCDC47-207ENST00000612558 U2SURPO15042 1029 aaKnown RBP11.75□□□□□ -0.53
CCDC47-207ENST00000612558 ATF3P18847 181 aa11.75□□□□□ -0.53
CCDC47-207ENST00000612558 PSME1Q06323 249 aa11.75□□□□□ -0.53
CCDC47-207ENST00000612558 PNNQ9H307 717 aaKnown RBP11.75□□□□□ -0.53
CCDC47-207ENST00000612558 CDK12Q9NYV4 1490 aaPredicted RBP11.74□□□□□ -0.53
CCDC47-207ENST00000612558 DCCP43146 1447 aa11.74□□□□□ -0.53
CCDC47-207ENST00000612558 ZNF521Q96K83 1311 aa11.74□□□□□ -0.53
CCDC47-207ENST00000612558 NLRP6P59044 892 aa11.74□□□□□ -0.53
CCDC47-207ENST00000612558 RRS1Q15050 365 aaKnown RBP11.74□□□□□ -0.53
CCDC47-207ENST00000612558 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
CCDC47-207ENST00000612558 ABTB2Q8N961 1025 aa11.73□□□□□ -0.53
CCDC47-207ENST00000612558 CDCA7LQ96GN5 454 aa11.73□□□□□ -0.53
CCDC47-207ENST00000612558 ORAI2Q96SN7 254 aa11.73□□□□□ -0.53
CCDC47-207ENST00000612558 TAOK2Q9UL54 1235 aa11.73□□□□□ -0.53
CCDC47-207ENST00000612558 C1orf167Q5SNV9 1468 aa11.73□□□□□ -0.53
CCDC47-207ENST00000612558 FCHSD2O94868 740 aa11.72□□□□□ -0.53
CCDC47-207ENST00000612558 IL13P35225 146 aa11.72□□□□□ -0.53
CCDC47-207ENST00000612558 CADPS2Q86UW7 1296 aa11.72□□□□□ -0.53
CCDC47-207ENST00000612558 TCP11L2Q8N4U5 519 aa11.72□□□□□ -0.53
CCDC47-207ENST00000612558 PIK3C2AO00443 1686 aa11.72□□□□□ -0.53
CCDC47-207ENST00000612558 PLEKHF1Q96S99 279 aa11.71□□□□□ -0.53
CCDC47-207ENST00000612558 MSH6P52701 1360 aa11.71□□□□□ -0.53
CCDC47-207ENST00000612558 FOXO3O43524 673 aa11.71□□□□□ -0.54
CCDC47-207ENST00000612558 USP54Q70EL1 1684 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 IQSEC2Q5JU85 1478 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 MST1RQ04912 1400 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 CCDC27Q2M243 656 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 WWC1Q8IX03 1113 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 KIF1AQ12756 1690 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 LRRC7Q96NW7 1537 aa11.7□□□□□ -0.54
CCDC47-207ENST00000612558 ZNF335Q9H4Z2 1342 aaPredicted RBP11.69□□□□□ -0.54
CCDC47-207ENST00000612558 MAPK8IP3Q9UPT6 1336 aa11.69□□□□□ -0.54
CCDC47-207ENST00000612558 SLFN5Q08AF3 891 aa11.69□□□□□ -0.54
CCDC47-207ENST00000612558 MAP3K19Q56UN5 1328 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.68□□□□□ -0.54
CCDC47-207ENST00000612558 NEFMP07197 916 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 NUTM2GQ5VZR2 741 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 KRT28Q7Z3Y7 464 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 TRMT2AQ8IZ69 625 aaKnown RBP11.68□□□□□ -0.54
CCDC47-207ENST00000612558 ZFP91Q96JP5 570 aaPredicted RBP11.68□□□□□ -0.54
CCDC47-207ENST00000612558 RSPH6AQ9H0K4 717 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 SBNO1A3KN83 1393 aa11.68□□□□□ -0.54
CCDC47-207ENST00000612558 E9PSI1 815 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 TMPOP42166 694 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 EIF4A2Q14240 407 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 NEUROD2Q15784 382 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 VARS2Q5ST30 1063 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 DUSP27Q5VZP5 1158 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 WDR63Q8IWG1 891 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 RRP7AQ9Y3A4 280 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 FLT4P35916 1363 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 KIF24Q5T7B8 1368 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 RNF123Q5XPI4 1314 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 MARF1Q9Y4F3 1742 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 XIRP1Q702N8 1843 aaKnown RBP11.67□□□□□ -0.54
CCDC47-207ENST00000612558 AMPHP49418 695 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 HSP90AB2PQ58FF8 381 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 KCNH5Q8NCM2 988 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 RCAN3Q9UKA8 241 aa11.67□□□□□ -0.54
CCDC47-207ENST00000612558 HMOX1P09601 288 aa11.66□□□□□ -0.54
CCDC47-207ENST00000612558 PRKAR2BP31323 418 aa11.66□□□□□ -0.54
CCDC47-207ENST00000612558 ERICH6BQ5W0A0 696 aa11.66□□□□□ -0.54
CCDC47-207ENST00000612558 PEAK1Q9H792 1746 aa11.66□□□□□ -0.54
CCDC47-207ENST00000612558 XPCQ01831 940 aaPredicted RBP11.65□□□□□ -0.54
CCDC47-207ENST00000612558 NPHP3Q7Z494 1330 aa11.64□□□□□ -0.55
CCDC47-207ENST00000612558 HOXC9P31274 260 aa11.63□□□□□ -0.55
CCDC47-207ENST00000612558 RIPK4P57078 832 aa11.63□□□□□ -0.55
CCDC47-207ENST00000612558 TRPM3Q9HCF6 1732 aaPredicted RBP11.63□□□□□ -0.55
CCDC47-207ENST00000612558 RTL1A6NKG5 1358 aa11.63□□□□□ -0.55
CCDC47-207ENST00000612558 NFE2L2Q16236 605 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 SULT6B1Q6IMI4 303 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 LMOD2Q6P5Q4 547 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 ZNF687Q8N1G0 1237 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 PHACTR3Q96KR7 559 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 SLAIN2Q9P270 581 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 GCP02774 474 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 IRX6P78412 446 aaPredicted RBP11.62□□□□□ -0.55
CCDC47-207ENST00000612558 TMEM92Q6UXU6 159 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 IP6K1Q92551 441 aa11.62□□□□□ -0.55
CCDC47-207ENST00000612558 USP19O94966 1318 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 NFAT5O94916 1531 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 ARHGEF10O15013 1369 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 BRINP3Q76B58 766 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 RNF166Q96A37 237 aaPredicted RBP11.61□□□□□ -0.55
CCDC47-207ENST00000612558 RNF25Q96BH1 459 aaPredicted RBP11.61□□□□□ -0.55
CCDC47-207ENST00000612558 MS4A4AQ96JQ5 239 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 RGPD1P0DJD0 1748 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 SLIT3O75094 1523 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 IL16Q14005 1332 aa11.61□□□□□ -0.55
CCDC47-207ENST00000612558 RRP1P56182 461 aaKnown RBP11.6□□□□□ -0.55
CCDC47-207ENST00000612558 AEBP1Q8IUX7 1158 aa11.6□□□□□ -0.55
CCDC47-207ENST00000612558 DDX17Q92841 729 aaKnown RBP11.6□□□□□ -0.55
CCDC47-207ENST00000612558 PTGER2P43116 358 aa11.59□□□□□ -0.55
CCDC47-207ENST00000612558 GPR153Q6NV75 609 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms