RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	ERC1	Q8IUD2	1116 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	LRRCC1	Q9C099	1032 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	ANTXR1	Q9H6X2	564 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	IQGAP1	P46940	1657 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	SETBP1	Q9Y6X0	1596 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	ERVK-7	P63135	1459 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	TTC22	Q5TAA0	569 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CEP152	O94986	1710 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	CDC42BPB	Q9Y5S2	1711 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	MAP3K4	Q9Y6R4	1608 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	SOS1	Q07889	1333 aa	Predicted RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC66	A2RUB6	948 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC183	Q5T5S1	534 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	TMEM132E	Q6IEE7	984 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	INTS4	Q96HW7	963 aa	Known RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	PPP1R9B	Q96SB3	815 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	PLA2R1	Q13018	1463 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	KIF2A	O00139	706 aa	Predicted RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	RAB11FIP3	O75154	756 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	NAT10	Q9H0A0	1025 aa	Known RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	ZKSCAN5	Q9Y2L8	839 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	ELL2	O00472	640 aa	Predicted RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	SEC24B	O95487	1268 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	SSFA2	P28290	1259 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	MKRN4P	Q13434	485 aa	Predicted RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	ZSCAN23	Q3MJ62	389 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	CARD14	Q9BXL6	1004 aa		4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	RRAGD	Q9NQL2	400 aa	Predicted RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	NOL7	Q9UMY1	257 aa	Known RBP	4.24	□□□□□ -1.73
VMP1-216	ENST00000592790	BECN2	A8MW95	431 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	UBTFL1	P0CB47	393 aa	Predicted RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	PRAM1	Q96QH2	718 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	CDK19	Q9BWU1	502 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	BCL11B	Q9C0K0	894 aa	Predicted RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	ZMYND15	Q9H091	742 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	ARGLU1	Q9NWB6	273 aa	Predicted RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	TSPYL4	Q9UJ04	414 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	NEMF	O60524	1076 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	RLBP1	P12271	317 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	AMPH	P49418	695 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	TEX35	Q5T0J7	233 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	ANKRD44	Q8N8A2	993 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	SPINK5	Q9NQ38	1064 aa	Predicted RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790		H3BQV1	296 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	KRT85	P78386	507 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	GPS2	Q13227	327 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	IFFO2	Q5TF58	517 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	MRPL50	Q8N5N7	158 aa	Known RBP	4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	ASXL2	Q76L83	1435 aa		4.23	□□□□□ -1.73
VMP1-216	ENST00000592790	IFIT2	P09913	472 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	FKBP5	Q13451	457 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	DCTPP1	Q9H773	170 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	TTC21B	Q7Z4L5	1316 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF500	O60304	480 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	DDX58	O95786	925 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	HMOX1	P09601	288 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	SSH2	Q76I76	1423 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	SYCE3	A1L190	88 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	RBM10	P98175	930 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CLASRP	Q8N2M8	674 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	PANK2	Q9BZ23	570 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CYP46A1	Q9Y6A2	500 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	EID1	Q9Y6B2	187 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	AOX1	Q06278	1338 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	VIRMA	Q69YN4	1812 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	TUBB4A	P04350	444 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	HSP90B1	P14625	803 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	MX1	P20591	662 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	UBE2H	P62256	183 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	FOXD4L5	Q5VV16	416 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	SAMD1	Q6SPF0	538 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC73	Q6ZRK6	1079 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CLEC17A	Q6ZS10	378 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	NOL8	Q76FK4	1167 aa	Known RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CABP1	Q9NZU7	370 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF219	Q9P2Y4	722 aa	Predicted RBP	4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	USP19	O94966	1318 aa		4.22	□□□□□ -1.73
VMP1-216	ENST00000592790	CLTCL1	P53675	1640 aa		4.21	□□□□□ -1.73
VMP1-216	ENST00000592790	KRT32	Q14532	448 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	RNF214	Q8ND24	703 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	SPOCK2	Q92563	424 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	SCAND2P	Q9GZW5	306 aa	Predicted RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	C1orf115	Q9H7X2	142 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	HOOK1	Q9UJC3	728 aa	Known RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	MED14	O60244	1454 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	ZFYVE16	Q7Z3T8	1539 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	ZBTB7B	O15156	539 aa	Predicted RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	EFCAB6	Q5THR3	1501 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	USP32	Q8NFA0	1604 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	BICD2	Q8TD16	824 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	GTPBP4	Q9BZE4	634 aa	Known RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	CGN	Q9P2M7	1197 aa	Known RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	CD109	Q6YHK3	1445 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790		A0A0U1RQG5	324 aa	Predicted RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	VPS37C	A5D8V6	355 aa	Predicted RBP	4.21	□□□□□ -1.74

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