RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 TWISTNBQ3B726 338 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-205ENST00000553474 ZBTB7BO15156 539 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-205ENST00000553474 SEC24BO95487 1268 aa16.26■□□□□ 0.19
SHMT2-205ENST00000553474 PIP4K2BP78356 416 aa16.26■□□□□ 0.19
SHMT2-205ENST00000553474 RRS1Q15050 365 aaKnown RBP16.26■□□□□ 0.19
SHMT2-205ENST00000553474 ZRANB1Q9UGI0 708 aa16.26■□□□□ 0.19
SHMT2-205ENST00000553474 KIAA0232Q92628 1395 aa16.26■□□□□ 0.19
SHMT2-205ENST00000553474 TOM1O60784 492 aa16.26■□□□□ 0.19
SHMT2-205ENST00000553474 PHF8Q9UPP1 1060 aa16.25■□□□□ 0.19
SHMT2-205ENST00000553474 ARHGEF10O15013 1369 aa16.25■□□□□ 0.19
SHMT2-205ENST00000553474 EIF5BO60841 1220 aaKnown RBP16.24■□□□□ 0.19
SHMT2-205ENST00000553474 SLC4A3P48751 1232 aa16.24■□□□□ 0.19
SHMT2-205ENST00000553474 EIF4A2Q14240 407 aaKnown RBP16.24■□□□□ 0.19
SHMT2-205ENST00000553474 NGDNQ8NEJ9 315 aaKnown RBP16.24■□□□□ 0.19
SHMT2-205ENST00000553474 USP54Q70EL1 1684 aa16.24■□□□□ 0.19
SHMT2-205ENST00000553474 PEAK1Q9H792 1746 aa16.24■□□□□ 0.19
SHMT2-205ENST00000553474 NHSL1Q5SYE7 1610 aa16.23■□□□□ 0.19
SHMT2-205ENST00000553474 BRINP3Q76B58 766 aa16.23■□□□□ 0.19
SHMT2-205ENST00000553474 XPCQ01831 940 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-205ENST00000553474 CHD1LQ86WJ1 897 aa16.22■□□□□ 0.19
SHMT2-205ENST00000553474 TSPYL6Q8N831 410 aa16.22■□□□□ 0.19
SHMT2-205ENST00000553474 DDX17Q92841 729 aaKnown RBP16.22■□□□□ 0.19
SHMT2-205ENST00000553474 SULT6B1Q6IMI4 303 aa16.21■□□□□ 0.19
SHMT2-205ENST00000553474 THUMPD2Q9BTF0 503 aaKnown RBP16.21■□□□□ 0.19
SHMT2-205ENST00000553474 SBNO1A3KN83 1393 aa16.21■□□□□ 0.19
SHMT2-205ENST00000553474 FLT4P35916 1363 aa16.21■□□□□ 0.19
SHMT2-205ENST00000553474 PHLPP1O60346 1717 aa16.21■□□□□ 0.19
SHMT2-205ENST00000553474 CHL1O00533 1208 aa16.21■□□□□ 0.18
SHMT2-205ENST00000553474 FOXO3O43524 673 aa16.21■□□□□ 0.18
SHMT2-205ENST00000553474 BMP2KLQ5H9B9 411 aa16.21■□□□□ 0.18
SHMT2-205ENST00000553474 KDRP35968 1356 aa16.2■□□□□ 0.18
SHMT2-205ENST00000553474 PTPRCP08575 1304 aa16.19■□□□□ 0.18
SHMT2-205ENST00000553474 C8orf58Q8NAV2 365 aa16.19■□□□□ 0.18
SHMT2-205ENST00000553474 C22orf23Q9BZE7 217 aa16.19■□□□□ 0.18
SHMT2-205ENST00000553474 INTS3Q68E01 1043 aaKnown RBP16.18■□□□□ 0.18
SHMT2-205ENST00000553474 TRPM3Q9HCF6 1732 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-205ENST00000553474 PSME1Q06323 249 aa16.18■□□□□ 0.18
SHMT2-205ENST00000553474 GSE1Q14687 1217 aa16.18■□□□□ 0.18
SHMT2-205ENST00000553474 NPHP3Q7Z494 1330 aa16.17■□□□□ 0.18
SHMT2-205ENST00000553474 CACNA1FO60840 1977 aa16.17■□□□□ 0.18
SHMT2-205ENST00000553474 AHDC1Q5TGY3 1603 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-205ENST00000553474 PIK3C2AO00443 1686 aa16.16■□□□□ 0.18
SHMT2-205ENST00000553474 HTATSF1O43719 755 aaKnown RBP16.16■□□□□ 0.18
SHMT2-205ENST00000553474 PXDNQ92626 1479 aa16.16■□□□□ 0.18
SHMT2-205ENST00000553474 FAM83GA6ND36 823 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 RBM25P49756 843 aaKnown RBP16.15■□□□□ 0.18
SHMT2-205ENST00000553474 HSP90AB2PQ58FF8 381 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 SOS1Q07889 1333 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-205ENST00000553474 CRB1P82279 1406 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 AEBP1Q8IUX7 1158 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 TBC1D2Q9BYX2 928 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 ANTXR1Q9H6X2 564 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 MAP3K19Q56UN5 1328 aa16.15■□□□□ 0.18
SHMT2-205ENST00000553474 ELL2O00472 640 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-205ENST00000553474 KRT28Q7Z3Y7 464 aa16.14■□□□□ 0.17
SHMT2-205ENST00000553474 RPAP2Q8IXW5 612 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-205ENST00000553474 GAS2L2Q8NHY3 880 aa16.14■□□□□ 0.17
SHMT2-205ENST00000553474 LNPKQ9C0E8 428 aa16.14■□□□□ 0.17
SHMT2-205ENST00000553474 IGSF1Q8N6C5 1336 aa16.14■□□□□ 0.17
SHMT2-205ENST00000553474 LMOD2Q6P5Q4 547 aa16.13■□□□□ 0.17
SHMT2-205ENST00000553474 COL16A1Q07092 1604 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-205ENST00000553474 ALS2Q96Q42 1657 aa16.13■□□□□ 0.17
SHMT2-205ENST00000553474 PLEKHG5O94827 1062 aa16.13■□□□□ 0.17
SHMT2-205ENST00000553474 MFAP1P55081 439 aaKnown RBP16.13■□□□□ 0.17
SHMT2-205ENST00000553474 ANKRD45Q5TZF3 282 aa16.13■□□□□ 0.17
SHMT2-205ENST00000553474 RTF1Q92541 710 aaKnown RBP16.13■□□□□ 0.17
SHMT2-205ENST00000553474 LRRC37A3O60309 1634 aa16.12■□□□□ 0.17
SHMT2-205ENST00000553474 RGS12O14924 1447 aa16.12■□□□□ 0.17
SHMT2-205ENST00000553474 DCTN1Q14203 1278 aa16.12■□□□□ 0.17
SHMT2-205ENST00000553474 BABAM1Q9NWV8 329 aa16.12■□□□□ 0.17
SHMT2-205ENST00000553474 FRAT2O75474 233 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-205ENST00000553474 SIRT2Q8IXJ6 389 aa16.11■□□□□ 0.17
SHMT2-205ENST00000553474 DCTPP1Q9H773 170 aa16.11■□□□□ 0.17
SHMT2-205ENST00000553474 MARF1Q9Y4F3 1742 aaKnown RBP16.11■□□□□ 0.17
SHMT2-205ENST00000553474 RTL1A6NKG5 1358 aa16.11■□□□□ 0.17
SHMT2-205ENST00000553474 NUTM2GQ5VZR2 741 aa16.1■□□□□ 0.17
SHMT2-205ENST00000553474 SNX21Q969T3 373 aa16.1■□□□□ 0.17
SHMT2-205ENST00000553474 TNS3Q68CZ2 1445 aa16.1■□□□□ 0.17
SHMT2-205ENST00000553474 AMPHP49418 695 aa16.1■□□□□ 0.17
SHMT2-205ENST00000553474 ANKRD44Q8N8A2 993 aa16.09■□□□□ 0.17
SHMT2-205ENST00000553474 SOS2Q07890 1332 aaPredicted RBP16.08■□□□□ 0.17
SHMT2-205ENST00000553474 MCM10Q7L590 875 aa16.08■□□□□ 0.17
SHMT2-205ENST00000553474 HSCBQ8IWL3 235 aa16.08■□□□□ 0.17
SHMT2-205ENST00000553474 ATP10DQ9P241 1426 aa16.08■□□□□ 0.16
SHMT2-205ENST00000553474 ABTB2Q8N961 1025 aa16.08■□□□□ 0.16
SHMT2-205ENST00000553474 MTHFSDQ2M296 383 aaKnown RBP16.07■□□□□ 0.16
SHMT2-205ENST00000553474 CHMP5Q9NZZ3 219 aa16.07■□□□□ 0.16
SHMT2-205ENST00000553474 ABCA3Q99758 1704 aa16.07■□□□□ 0.16
SHMT2-205ENST00000553474 N4BP2Q86UW6 1770 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-205ENST00000553474 CCT4P50991 539 aaKnown RBP16.06■□□□□ 0.16
SHMT2-205ENST00000553474 NLRP6P59044 892 aa16.06■□□□□ 0.16
SHMT2-205ENST00000553474 EYA1Q99502 592 aa16.06■□□□□ 0.16
SHMT2-205ENST00000553474 SLKQ9H2G2 1235 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-205ENST00000553474 C1orf115Q9H7X2 142 aa16.06■□□□□ 0.16
SHMT2-205ENST00000553474 PHRF1Q9P1Y6 1649 aaKnown RBP16.06■□□□□ 0.16
SHMT2-205ENST00000553474 SPATA31A3Q5VYP0 1347 aa16.06■□□□□ 0.16
SHMT2-205ENST00000553474 HMMRO75330 724 aa16.05■□□□□ 0.16
SHMT2-205ENST00000553474 CDC45O75419 566 aa16.05■□□□□ 0.16
SHMT2-205ENST00000553474 TSPYL4Q9UJ04 414 aa16.05■□□□□ 0.16
SHMT2-205ENST00000553474 CRYBG1Q9Y4K1 1723 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms