RNA–Protein interactions for RNA: ENST00000550150.1

SMARCC2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, human

TSL 2

Gene SMARCC2, Length 3,244 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCC2-208	ENST00000550150	TRIM35	Q9UPQ4	493 aa		13.34	□□□□□ -0.27
SMARCC2-208	ENST00000550150	MSN	P26038	577 aa	Known RBP	13.34	□□□□□ -0.27
SMARCC2-208	ENST00000550150	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.34	□□□□□ -0.27
SMARCC2-208	ENST00000550150	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.34	□□□□□ -0.27
SMARCC2-208	ENST00000550150	CAVIN1	Q6NZI2	390 aa	Known RBP	13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	SMC5	Q8IY18	1101 aa		13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	GAS2L2	Q8NHY3	880 aa		13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	ZBTB40	Q9NUA8	1239 aa		13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	XIRP1	Q702N8	1843 aa	Known RBP	13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PNPLA6	Q8IY17	1366 aa		13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	TBC1D9	Q6ZT07	1266 aa		13.33	□□□□□ -0.28
SMARCC2-208	ENST00000550150	NUCB1	Q02818	461 aa		13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	NOL8	Q76FK4	1167 aa	Known RBP	13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	ZNF692	Q9BU19	519 aa	Predicted RBP	13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150		K7ELQ4	463 aa	Predicted RBP	13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	KIAA1211	Q6ZU35	1233 aa		13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	SSH2	Q76I76	1423 aa		13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	CHAMP1	Q96JM3	812 aa		13.32	□□□□□ -0.28
SMARCC2-208	ENST00000550150	DIAPH1	O60610	1272 aa	Known RBP	13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PRKAR2B	P31323	418 aa		13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	CCDC27	Q2M243	656 aa		13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	KIF16B	Q96L93	1317 aa		13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	EDC4	Q6P2E9	1401 aa	Known RBP	13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PIK3C2A	O00443	1686 aa		13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	USP6	P35125	1406 aa		13.31	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RAB3GAP1	Q15042	981 aa		13.3	□□□□□ -0.28
SMARCC2-208	ENST00000550150	MPND	Q8N594	471 aa		13.3	□□□□□ -0.28
SMARCC2-208	ENST00000550150	TSPYL6	Q8N831	410 aa		13.3	□□□□□ -0.28
SMARCC2-208	ENST00000550150	ADGRL3	Q9HAR2	1447 aa		13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PLEKHG3	A1L390	1219 aa		13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	CALD1	Q05682	793 aa	Known RBP	13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	FAM13B	Q9NYF5	915 aa		13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RBM25	P49756	843 aa	Known RBP	13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	EMILIN1	Q9Y6C2	1016 aa		13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PEAK1	Q9H792	1746 aa		13.29	□□□□□ -0.28
SMARCC2-208	ENST00000550150	DLG5	Q8TDM6	1919 aa		13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	PKP1	Q13835	747 aa		13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RRP9	O43818	475 aa	Known RBP	13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RRS1	Q15050	365 aa	Known RBP	13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	LRRC7	Q96NW7	1537 aa		13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RNF214	Q8ND24	703 aa		13.28	□□□□□ -0.28
SMARCC2-208	ENST00000550150	ORAI2	Q96SN7	254 aa		13.27	□□□□□ -0.28
SMARCC2-208	ENST00000550150	RBM27	Q9P2N5	1060 aa	Known RBP	13.27	□□□□□ -0.28
SMARCC2-208	ENST00000550150	POLK	Q9UBT6	870 aa		13.27	□□□□□ -0.28
SMARCC2-208	ENST00000550150	TTC21B	Q7Z4L5	1316 aa		13.27	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PRPF40A	O75400	957 aa	Known RBP	13.27	□□□□□ -0.29
SMARCC2-208	ENST00000550150	DCTN1	Q14203	1278 aa		13.27	□□□□□ -0.29
SMARCC2-208	ENST00000550150	BMP2KL	Q5H9B9	411 aa		13.27	□□□□□ -0.29
SMARCC2-208	ENST00000550150	BAG4	O95429	457 aa	Known RBP	13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	OVOS2	A0A0J9YW53	1432 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	OVOS2	Q6IE36	1432 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	NUTM2G	Q5VZR2	741 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	KIF2C	Q99661	725 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	SNX21	Q969T3	373 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PLEKHF1	Q96S99	279 aa		13.26	□□□□□ -0.29
SMARCC2-208	ENST00000550150	SMARCA5	O60264	1052 aa	Predicted RBP	13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	XPC	Q01831	940 aa	Predicted RBP	13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	SOX12	O15370	315 aa		13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	CT47B1	P0C2W7	299 aa	Predicted RBP	13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	DDX17	Q92841	729 aa	Known RBP	13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PHACTR3	Q96KR7	559 aa		13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	TMEM94	Q12767	1356 aa		13.25	□□□□□ -0.29
SMARCC2-208	ENST00000550150	CDC45	O75419	566 aa		13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	FAM83G	A6ND36	823 aa		13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	CCDC173	Q0VFZ6	552 aa		13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ZGPAT	Q8N5A5	531 aa	Known RBP	13.24	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ANKAR	Q7Z5J8	1434 aa		13.23	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ZBTB7B	O15156	539 aa	Predicted RBP	13.23	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PROSER2	Q86WR7	435 aa	Predicted RBP	13.23	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PTMA	P06454	111 aa	Known RBP	13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ZSCAN30	Q86W11	494 aa		13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	GCC1	Q96CN9	775 aa		13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	AK9	Q5TCS8	1911 aa		13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	TWISTNB	Q3B726	338 aa	Predicted RBP	13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	SIRT2	Q8IXJ6	389 aa		13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	NGDN	Q8NEJ9	315 aa	Known RBP	13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.22	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ESCO1	Q5FWF5	840 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	C14orf37	Q86TY3	774 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ISY1	Q9ULR0	285 aa	Known RBP	13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	SYCE3	A1L190	88 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	GSPT1	P15170	499 aa	Known RBP	13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	DDIT3	P35638	169 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	PRIM1	P49642	420 aa	Known RBP	13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	KRT24	Q2M2I5	525 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	TSHZ3	Q63HK5	1081 aa		13.21	□□□□□ -0.29
SMARCC2-208	ENST00000550150	ZSCAN23	Q3MJ62	389 aa		13.2	□□□□□ -0.3
SMARCC2-208	ENST00000550150	SLC4A10	Q6U841	1118 aa		13.2	□□□□□ -0.3
SMARCC2-208	ENST00000550150	PLCB2	Q00722	1185 aa		13.2	□□□□□ -0.3
SMARCC2-208	ENST00000550150	KLHL40	Q2TBA0	621 aa		13.2	□□□□□ -0.3
SMARCC2-208	ENST00000550150	RBSN	Q9H1K0	784 aa		13.2	□□□□□ -0.3
SMARCC2-208	ENST00000550150	MBIP	Q9NS73	344 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms