RNA–Protein interactions for RNA: ENST00000539584.5

UBE3B-209, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 2,006 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-209ENST00000539584 NUDT16Q96DE0 195 aaKnown RBP16.33■□□□□ 0.21
UBE3B-209ENST00000539584 DDX49Q9Y6V7 483 aaKnown RBP16.33■□□□□ 0.21
UBE3B-209ENST00000539584 DLG5Q8TDM6 1919 aa16.33■□□□□ 0.2
UBE3B-209ENST00000539584 KNDC1Q76NI1 1749 aa16.33■□□□□ 0.2
UBE3B-209ENST00000539584 SSFA2P28290 1259 aa16.33■□□□□ 0.2
UBE3B-209ENST00000539584 HS1BP3Q53T59 392 aa16.33■□□□□ 0.2
UBE3B-209ENST00000539584 CEP85Q6P2H3 762 aa16.32■□□□□ 0.2
UBE3B-209ENST00000539584 NAP1L5Q96NT1 182 aaPredicted RBP16.32■□□□□ 0.2
UBE3B-209ENST00000539584 OSBPL3Q9H4L5 887 aa16.32■□□□□ 0.2
UBE3B-209ENST00000539584 C3P01024 1663 aa16.31■□□□□ 0.2
UBE3B-209ENST00000539584 FBLN1P23142 703 aa16.31■□□□□ 0.2
UBE3B-209ENST00000539584 RBM42Q9BTD8 480 aaKnown RBP16.31■□□□□ 0.2
UBE3B-209ENST00000539584 RGS12O14924 1447 aa16.31■□□□□ 0.2
UBE3B-209ENST00000539584 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
UBE3B-209ENST00000539584 MCM2P49736 904 aa16.3■□□□□ 0.2
UBE3B-209ENST00000539584 RTL1A6NKG5 1358 aa16.3■□□□□ 0.2
UBE3B-209ENST00000539584 AKAP12Q02952 1782 aa16.3■□□□□ 0.2
UBE3B-209ENST00000539584 CPS1P31327 1500 aa16.29■□□□□ 0.2
UBE3B-209ENST00000539584 RRP9O43818 475 aaKnown RBP16.28■□□□□ 0.2
UBE3B-209ENST00000539584 SDSP20132 328 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 GLIPR1L2Q4G1C9 344 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 TTC21BQ7Z4L5 1316 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 NRXN3Q9Y4C0 1643 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 ERC2O15083 957 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 CCT4P50991 539 aaKnown RBP16.28■□□□□ 0.2
UBE3B-209ENST00000539584 FOXD4L1Q9NU39 408 aa16.28■□□□□ 0.2
UBE3B-209ENST00000539584 FAM83GA6ND36 823 aa16.27■□□□□ 0.2
UBE3B-209ENST00000539584 TPM2P07951 284 aa16.27■□□□□ 0.2
UBE3B-209ENST00000539584 RRS1Q15050 365 aaKnown RBP16.27■□□□□ 0.2
UBE3B-209ENST00000539584 ITSN1Q15811 1721 aa16.27■□□□□ 0.2
UBE3B-209ENST00000539584 ZSCAN30Q86W11 494 aa16.27■□□□□ 0.2
UBE3B-209ENST00000539584 ARHGEF10O15013 1369 aa16.27■□□□□ 0.19
UBE3B-209ENST00000539584 EPB41L2O43491 1005 aaKnown RBP16.26■□□□□ 0.19
UBE3B-209ENST00000539584 TERF1P54274 439 aa16.26■□□□□ 0.19
UBE3B-209ENST00000539584 EIF4A2Q14240 407 aaKnown RBP16.26■□□□□ 0.19
UBE3B-209ENST00000539584 LMBRD1Q9NUN5 540 aa16.26■□□□□ 0.19
UBE3B-209ENST00000539584 SULT6B1Q6IMI4 303 aa16.25■□□□□ 0.19
UBE3B-209ENST00000539584 METP08581 1390 aa16.25■□□□□ 0.19
UBE3B-209ENST00000539584 MSH6P52701 1360 aa16.25■□□□□ 0.19
UBE3B-209ENST00000539584 MCTP1Q6DN14 999 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 SOS1Q07889 1333 aaPredicted RBP16.24■□□□□ 0.19
UBE3B-209ENST00000539584 ERBB4Q15303 1308 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 OVOS2A0A0J9YW53 1432 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 OVOS2Q6IE36 1432 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 ANAPC15P60006 121 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 DCTN1Q14203 1278 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 C16orf71Q8IYS4 520 aaPredicted RBP16.24■□□□□ 0.19
UBE3B-209ENST00000539584 ZRANB1Q9UGI0 708 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 USP31Q70CQ4 1352 aa16.24■□□□□ 0.19
UBE3B-209ENST00000539584 CRB1P82279 1406 aa16.23■□□□□ 0.19
UBE3B-209ENST00000539584 PLEKHG3A1L390 1219 aa16.23■□□□□ 0.19
UBE3B-209ENST00000539584 MCCP23508 829 aa16.23■□□□□ 0.19
UBE3B-209ENST00000539584 ZSCAN23Q3MJ62 389 aa16.23■□□□□ 0.19
UBE3B-209ENST00000539584 IL17RAQ96F46 866 aa16.23■□□□□ 0.19
UBE3B-209ENST00000539584 MBD3O95983 291 aa16.22■□□□□ 0.19
UBE3B-209ENST00000539584 MSNP26038 577 aaKnown RBP16.22■□□□□ 0.19
UBE3B-209ENST00000539584 TXNDC2Q86VQ3 553 aa16.22■□□□□ 0.19
UBE3B-209ENST00000539584 MEIS3Q99687 375 aa16.22■□□□□ 0.19
UBE3B-209ENST00000539584 RGPD1P0DJD0 1748 aa16.21■□□□□ 0.19
UBE3B-209ENST00000539584 SSH2Q76I76 1423 aa16.21■□□□□ 0.19
UBE3B-209ENST00000539584 HTATSF1O43719 755 aaKnown RBP16.21■□□□□ 0.19
UBE3B-209ENST00000539584 SLC4A2P04920 1241 aa16.21■□□□□ 0.19
UBE3B-209ENST00000539584 PDE1AP54750 535 aa16.21■□□□□ 0.19
UBE3B-209ENST00000539584 INTS4Q96HW7 963 aaKnown RBP16.21■□□□□ 0.19
UBE3B-209ENST00000539584 PDLIM2Q96JY6 352 aa16.21■□□□□ 0.18
UBE3B-209ENST00000539584 SRCIN1Q9C0H9 1055 aa16.21■□□□□ 0.18
UBE3B-209ENST00000539584 GNAI2P04899 355 aa16.2■□□□□ 0.18
UBE3B-209ENST00000539584 MCM5P33992 734 aa16.2■□□□□ 0.18
UBE3B-209ENST00000539584 HSP90AA2PQ14568 343 aaPredicted RBP16.2■□□□□ 0.18
UBE3B-209ENST00000539584 NALCNQ8IZF0 1738 aa16.2■□□□□ 0.18
UBE3B-209ENST00000539584 GNAI3P08754 354 aa16.19■□□□□ 0.18
UBE3B-209ENST00000539584 CAVIN1Q6NZI2 390 aaKnown RBP16.19■□□□□ 0.18
UBE3B-209ENST00000539584 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.19■□□□□ 0.18
UBE3B-209ENST00000539584 RTF1Q92541 710 aaKnown RBP16.19■□□□□ 0.18
UBE3B-209ENST00000539584 AEBP1Q8IUX7 1158 aa16.19■□□□□ 0.18
UBE3B-209ENST00000539584 OTUD7AQ8TE49 926 aaPredicted RBP16.19■□□□□ 0.18
UBE3B-209ENST00000539584 TTC21AQ8NDW8 1320 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 PRR36Q9H6K5 1346 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 OFD1O75665 1012 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 CUL4AQ13619 759 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 MCM10Q7L590 875 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 KLHL34Q8N239 644 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 USP6P35125 1406 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 AOX1Q06278 1338 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 BABAM1Q9NWV8 329 aa16.18■□□□□ 0.18
UBE3B-209ENST00000539584 NOL7Q9UMY1 257 aaKnown RBP16.18■□□□□ 0.18
UBE3B-209ENST00000539584 KDRP35968 1356 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 SALL3Q9BXA9 1300 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 TOPAZ1Q8N9V7 1692 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 NCLP19338 710 aaKnown RBP16.17■□□□□ 0.18
UBE3B-209ENST00000539584 LRSAM1Q6UWE0 723 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 STK31Q9BXU1 1019 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 LRRCC1Q9C099 1032 aa16.17■□□□□ 0.18
UBE3B-209ENST00000539584 SMARCA5O60264 1052 aaPredicted RBP16.16■□□□□ 0.18
UBE3B-209ENST00000539584 ZNF500O60304 480 aaPredicted RBP16.16■□□□□ 0.18
UBE3B-209ENST00000539584 PRPF40AO75400 957 aaKnown RBP16.16■□□□□ 0.18
UBE3B-209ENST00000539584 STAP2Q9UGK3 403 aa16.16■□□□□ 0.18
UBE3B-209ENST00000539584 ACEP12821 1306 aa16.16■□□□□ 0.18
UBE3B-209ENST00000539584 SYAP1Q96A49 352 aaPredicted RBP16.16■□□□□ 0.18
UBE3B-209ENST00000539584 ESYT1Q9BSJ8 1104 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms