RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	NLRP6	P59044	892 aa		13.74	□□□□□ -0.21
SPIDR-222	ENST00000524006	SULT6B1	Q6IMI4	303 aa		13.74	□□□□□ -0.21
SPIDR-222	ENST00000524006	CHMP4B	Q9H444	224 aa	Known RBP	13.74	□□□□□ -0.21
SPIDR-222	ENST00000524006	PHF8	Q9UPP1	1060 aa		13.74	□□□□□ -0.21
SPIDR-222	ENST00000524006	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.73	□□□□□ -0.21
SPIDR-222	ENST00000524006	ALDH1L2	Q3SY69	923 aa		13.73	□□□□□ -0.21
SPIDR-222	ENST00000524006	NGLY1	Q96IV0	654 aa		13.73	□□□□□ -0.21
SPIDR-222	ENST00000524006	MAP3K19	Q56UN5	1328 aa		13.72	□□□□□ -0.21
SPIDR-222	ENST00000524006	MVP	Q14764	893 aa	Known RBP	13.72	□□□□□ -0.21
SPIDR-222	ENST00000524006	ABTB2	Q8N961	1025 aa		13.72	□□□□□ -0.21
SPIDR-222	ENST00000524006	LRRC37A3	O60309	1634 aa		13.72	□□□□□ -0.21
SPIDR-222	ENST00000524006	RGPD2	P0DJD1	1756 aa		13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	ITPRIP	Q8IWB1	547 aa		13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	CNKSR2	Q8WXI2	1034 aa		13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	RTF1	Q92541	710 aa	Known RBP	13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	PHACTR3	Q96KR7	559 aa		13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	RWDD1	Q9H446	243 aa	Predicted RBP	13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	DDX19B	Q9UMR2	479 aa		13.71	□□□□□ -0.21
SPIDR-222	ENST00000524006	FAM208A	Q9UK61	1670 aa	Known RBP	13.7	□□□□□ -0.22
SPIDR-222	ENST00000524006	PSME1	Q06323	249 aa		13.7	□□□□□ -0.22
SPIDR-222	ENST00000524006	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.7	□□□□□ -0.22
SPIDR-222	ENST00000524006	SSH1	Q8WYL5	1049 aa		13.7	□□□□□ -0.22
SPIDR-222	ENST00000524006	PDE4A	P27815	886 aa		13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	RGS3	P49796	1198 aa		13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	ESCO1	Q5FWF5	840 aa		13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	ATF7IP	Q6VMQ6	1270 aa		13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	NPM2	Q86SE8	214 aa	Known RBP	13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	USP21	Q9UK80	565 aa		13.69	□□□□□ -0.22
SPIDR-222	ENST00000524006	HSP90AB2P	Q58FF8	381 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	NUTM2G	Q5VZR2	741 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	AEBP1	Q8IUX7	1158 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	GAS2L2	Q8NHY3	880 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	THUMPD2	Q9BTF0	503 aa	Known RBP	13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	NFAT5	O94916	1531 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	RGPD5	Q99666	1765 aa		13.68	□□□□□ -0.22
SPIDR-222	ENST00000524006	ATRN	O75882	1429 aa		13.67	□□□□□ -0.22
SPIDR-222	ENST00000524006	CFAP44	Q96MT7	982 aa		13.67	□□□□□ -0.22
SPIDR-222	ENST00000524006	MBIP	Q9NS73	344 aa		13.67	□□□□□ -0.22
SPIDR-222	ENST00000524006	NOB1	Q9ULX3	412 aa	Known RBP	13.67	□□□□□ -0.22
SPIDR-222	ENST00000524006	PXDN	Q92626	1479 aa		13.67	□□□□□ -0.22
SPIDR-222	ENST00000524006	LMO7	Q8WWI1	1683 aa		13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	ZBTB7C	A1YPR0	619 aa		13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	TRIM27	P14373	513 aa		13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	MYT1	Q01538	1121 aa		13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	TWISTNB	Q3B726	338 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	KCNH5	Q8NCM2	988 aa		13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	TRPC5	Q9UL62	973 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-222	ENST00000524006	NPHP3	Q7Z494	1330 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	IGSF1	Q8N6C5	1336 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	FOXO3	O43524	673 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	RLBP1	P12271	317 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	XPC	Q01831	940 aa	Predicted RBP	13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	FAM161A	Q3B820	660 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	BACH2	Q9BYV9	841 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	API5	Q9BZZ5	524 aa	Known RBP	13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	ALS2	Q96Q42	1657 aa		13.65	□□□□□ -0.22
SPIDR-222	ENST00000524006	SLIT3	O75094	1523 aa		13.64	□□□□□ -0.23
SPIDR-222	ENST00000524006	BCL9L	Q86UU0	1499 aa		13.64	□□□□□ -0.23
SPIDR-222	ENST00000524006	KDR	P35968	1356 aa		13.64	□□□□□ -0.23
SPIDR-222	ENST00000524006	HOXC9	P31274	260 aa		13.64	□□□□□ -0.23
SPIDR-222	ENST00000524006	DDRGK1	Q96HY6	314 aa		13.64	□□□□□ -0.23
SPIDR-222	ENST00000524006	LMOD2	Q6P5Q4	547 aa		13.63	□□□□□ -0.23
SPIDR-222	ENST00000524006	LTV1	Q96GA3	475 aa	Predicted RBP	13.63	□□□□□ -0.23
SPIDR-222	ENST00000524006	TNN	Q9UQP3	1299 aa		13.63	□□□□□ -0.23
SPIDR-222	ENST00000524006	NOP58	Q9Y2X3	529 aa	Known RBP	13.63	□□□□□ -0.23
SPIDR-222	ENST00000524006	KIAA0232	Q92628	1395 aa		13.62	□□□□□ -0.23
SPIDR-222	ENST00000524006	MAP3K5	Q99683	1374 aa		13.62	□□□□□ -0.23
SPIDR-222	ENST00000524006	FAM83G	A6ND36	823 aa		13.62	□□□□□ -0.23
SPIDR-222	ENST00000524006	ZNF853	P0CG23	659 aa		13.62	□□□□□ -0.23
SPIDR-222	ENST00000524006	DAXX	Q9UER7	740 aa	Predicted RBP	13.62	□□□□□ -0.23
SPIDR-222	ENST00000524006	CAMTA1	Q9Y6Y1	1673 aa		13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	BRPF1	P55201	1214 aa	Predicted RBP	13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	DCTN1	Q14203	1278 aa		13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	TMEM57	Q8N5G2	664 aa		13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	ARHGAP45	Q92619	1136 aa		13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	IPO9	Q96P70	1041 aa	Known RBP	13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	ANP32E	Q9BTT0	268 aa		13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.61	□□□□□ -0.23
SPIDR-222	ENST00000524006	KDM3B	Q7LBC6	1761 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	ELL2	O00472	640 aa	Predicted RBP	13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	VAMP4	O75379	141 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	IGHD	P01880	384 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	MCM10	Q7L590	875 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	MRPL50	Q8N5N7	158 aa	Known RBP	13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	EYA1	Q99502	592 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	TSPYL4	Q9UJ04	414 aa		13.6	□□□□□ -0.23
SPIDR-222	ENST00000524006	HTATSF1	O43719	755 aa	Known RBP	13.59	□□□□□ -0.23
SPIDR-222	ENST00000524006	GNAT3	A8MTJ3	354 aa		13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	SKAP1	Q86WV1	359 aa		13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	GJD4	Q96KN9	370 aa	Predicted RBP	13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	UPF2	Q9HAU5	1272 aa	Known RBP	13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	PCDHB15	Q9Y5E8	787 aa		13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	SPATA31A3	Q5VYP0	1347 aa		13.58	□□□□□ -0.24
SPIDR-222	ENST00000524006	CRB1	P82279	1406 aa		13.57	□□□□□ -0.24
SPIDR-222	ENST00000524006	HDAC1	Q13547	482 aa	Predicted RBP	13.57	□□□□□ -0.24
SPIDR-222	ENST00000524006	MTHFSD	Q2M296	383 aa	Known RBP	13.57	□□□□□ -0.24
SPIDR-222	ENST00000524006	C8orf58	Q8NAV2	365 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms