RNA–Protein interactions for RNA: ENST00000517824.5

SPIDR-204, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 849 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-204	ENST00000517824	EIF4A2	Q14240	407 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-204	ENST00000517824	DZIP1L	Q8IYY4	767 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-204	ENST00000517824	IFT57	Q9NWB7	429 aa		13.75	□□□□□ -0.21
SPIDR-204	ENST00000517824	RTL1	A6NKG5	1358 aa		13.74	□□□□□ -0.21
SPIDR-204	ENST00000517824	NLRP6	P59044	892 aa		13.74	□□□□□ -0.21
SPIDR-204	ENST00000517824	SULT6B1	Q6IMI4	303 aa		13.74	□□□□□ -0.21
SPIDR-204	ENST00000517824	CHMP4B	Q9H444	224 aa	Known RBP	13.74	□□□□□ -0.21
SPIDR-204	ENST00000517824	PHF8	Q9UPP1	1060 aa		13.74	□□□□□ -0.21
SPIDR-204	ENST00000517824	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.73	□□□□□ -0.21
SPIDR-204	ENST00000517824	ALDH1L2	Q3SY69	923 aa		13.73	□□□□□ -0.21
SPIDR-204	ENST00000517824	NGLY1	Q96IV0	654 aa		13.73	□□□□□ -0.21
SPIDR-204	ENST00000517824	MAP3K19	Q56UN5	1328 aa		13.72	□□□□□ -0.21
SPIDR-204	ENST00000517824	MVP	Q14764	893 aa	Known RBP	13.72	□□□□□ -0.21
SPIDR-204	ENST00000517824	ABTB2	Q8N961	1025 aa		13.72	□□□□□ -0.21
SPIDR-204	ENST00000517824	LRRC37A3	O60309	1634 aa		13.72	□□□□□ -0.21
SPIDR-204	ENST00000517824	RGPD2	P0DJD1	1756 aa		13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	ITPRIP	Q8IWB1	547 aa		13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	RTF1	Q92541	710 aa	Known RBP	13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	PHACTR3	Q96KR7	559 aa		13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	RWDD1	Q9H446	243 aa	Predicted RBP	13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	DDX19B	Q9UMR2	479 aa		13.71	□□□□□ -0.21
SPIDR-204	ENST00000517824	FAM208A	Q9UK61	1670 aa	Known RBP	13.7	□□□□□ -0.22
SPIDR-204	ENST00000517824	PSME1	Q06323	249 aa		13.7	□□□□□ -0.22
SPIDR-204	ENST00000517824	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.7	□□□□□ -0.22
SPIDR-204	ENST00000517824	SSH1	Q8WYL5	1049 aa		13.7	□□□□□ -0.22
SPIDR-204	ENST00000517824	PDE4A	P27815	886 aa		13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	RGS3	P49796	1198 aa		13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	ESCO1	Q5FWF5	840 aa		13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	ATF7IP	Q6VMQ6	1270 aa		13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	NPM2	Q86SE8	214 aa	Known RBP	13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	USP21	Q9UK80	565 aa		13.69	□□□□□ -0.22
SPIDR-204	ENST00000517824	HSP90AB2P	Q58FF8	381 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	NUTM2G	Q5VZR2	741 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	AEBP1	Q8IUX7	1158 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	GAS2L2	Q8NHY3	880 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	THUMPD2	Q9BTF0	503 aa	Known RBP	13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	NFAT5	O94916	1531 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	RGPD5	Q99666	1765 aa		13.68	□□□□□ -0.22
SPIDR-204	ENST00000517824	ATRN	O75882	1429 aa		13.67	□□□□□ -0.22
SPIDR-204	ENST00000517824	CFAP44	Q96MT7	982 aa		13.67	□□□□□ -0.22
SPIDR-204	ENST00000517824	MBIP	Q9NS73	344 aa		13.67	□□□□□ -0.22
SPIDR-204	ENST00000517824	NOB1	Q9ULX3	412 aa	Known RBP	13.67	□□□□□ -0.22
SPIDR-204	ENST00000517824	PXDN	Q92626	1479 aa		13.67	□□□□□ -0.22
SPIDR-204	ENST00000517824	LMO7	Q8WWI1	1683 aa		13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	ZBTB7C	A1YPR0	619 aa		13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	TRIM27	P14373	513 aa		13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	MYT1	Q01538	1121 aa		13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	TWISTNB	Q3B726	338 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	KCNH5	Q8NCM2	988 aa		13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	TRPC5	Q9UL62	973 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.66	□□□□□ -0.22
SPIDR-204	ENST00000517824	NPHP3	Q7Z494	1330 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	IGSF1	Q8N6C5	1336 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	FOXO3	O43524	673 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	RLBP1	P12271	317 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	HOXD11	P31277	338 aa	Predicted RBP	13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	XPC	Q01831	940 aa	Predicted RBP	13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	FAM161A	Q3B820	660 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	BACH2	Q9BYV9	841 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	API5	Q9BZZ5	524 aa	Known RBP	13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	ALS2	Q96Q42	1657 aa		13.65	□□□□□ -0.22
SPIDR-204	ENST00000517824	SLIT3	O75094	1523 aa		13.64	□□□□□ -0.23
SPIDR-204	ENST00000517824	BCL9L	Q86UU0	1499 aa		13.64	□□□□□ -0.23
SPIDR-204	ENST00000517824	KDR	P35968	1356 aa		13.64	□□□□□ -0.23
SPIDR-204	ENST00000517824	HOXC9	P31274	260 aa		13.64	□□□□□ -0.23
SPIDR-204	ENST00000517824	DDRGK1	Q96HY6	314 aa		13.64	□□□□□ -0.23
SPIDR-204	ENST00000517824	LMOD2	Q6P5Q4	547 aa		13.63	□□□□□ -0.23
SPIDR-204	ENST00000517824	LTV1	Q96GA3	475 aa	Predicted RBP	13.63	□□□□□ -0.23
SPIDR-204	ENST00000517824	TNN	Q9UQP3	1299 aa		13.63	□□□□□ -0.23
SPIDR-204	ENST00000517824	NOP58	Q9Y2X3	529 aa	Known RBP	13.63	□□□□□ -0.23
SPIDR-204	ENST00000517824	KIAA0232	Q92628	1395 aa		13.62	□□□□□ -0.23
SPIDR-204	ENST00000517824	MAP3K5	Q99683	1374 aa		13.62	□□□□□ -0.23
SPIDR-204	ENST00000517824	FAM83G	A6ND36	823 aa		13.62	□□□□□ -0.23
SPIDR-204	ENST00000517824	ZNF853	P0CG23	659 aa		13.62	□□□□□ -0.23
SPIDR-204	ENST00000517824	DAXX	Q9UER7	740 aa	Predicted RBP	13.62	□□□□□ -0.23
SPIDR-204	ENST00000517824	CAMTA1	Q9Y6Y1	1673 aa		13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	BRPF1	P55201	1214 aa	Predicted RBP	13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	DCTN1	Q14203	1278 aa		13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	TMEM57	Q8N5G2	664 aa		13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	ARHGAP45	Q92619	1136 aa		13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	IPO9	Q96P70	1041 aa	Known RBP	13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	ANP32E	Q9BTT0	268 aa		13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.61	□□□□□ -0.23
SPIDR-204	ENST00000517824	KDM3B	Q7LBC6	1761 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	ELL2	O00472	640 aa	Predicted RBP	13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	VAMP4	O75379	141 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	IGHD	P01880	384 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	MCM10	Q7L590	875 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	MRPL50	Q8N5N7	158 aa	Known RBP	13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	EYA1	Q99502	592 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	TSPYL4	Q9UJ04	414 aa		13.6	□□□□□ -0.23
SPIDR-204	ENST00000517824	HTATSF1	O43719	755 aa	Known RBP	13.59	□□□□□ -0.23
SPIDR-204	ENST00000517824	GNAT3	A8MTJ3	354 aa		13.58	□□□□□ -0.24
SPIDR-204	ENST00000517824	SKAP1	Q86WV1	359 aa		13.58	□□□□□ -0.24
SPIDR-204	ENST00000517824	GJD4	Q96KN9	370 aa	Predicted RBP	13.58	□□□□□ -0.24
SPIDR-204	ENST00000517824	UPF2	Q9HAU5	1272 aa	Known RBP	13.58	□□□□□ -0.24
SPIDR-204	ENST00000517824	PCDHB15	Q9Y5E8	787 aa		13.58	□□□□□ -0.24
SPIDR-204	ENST00000517824	SPATA31A3	Q5VYP0	1347 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms