RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 ZNF408Q9H9D4 720 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 FAM83GA6ND36 823 aa3.71□□□□□ -1.81
NEDD4-208ENST00000508342 AEBP1Q8IUX7 1158 aa3.71□□□□□ -1.81
NEDD4-208ENST00000508342 AKAP12Q02952 1782 aa3.71□□□□□ -1.81
NEDD4-208ENST00000508342 ADGRF5Q8IZF2 1346 aa3.71□□□□□ -1.81
NEDD4-208ENST00000508342 GNPATO15228 680 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 ZBTB7AO95365 584 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 DDX58O95786 925 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 ZNF530Q6P9A1 599 aaPredicted RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 BRINP3Q76B58 766 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 PCDH11XQ9BZA7 1347 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 PCDH11YQ9BZA8 1340 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 PLIN1O60240 522 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 DDX10Q13206 875 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 ANKIB1Q9P2G1 1089 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 YTHDC2Q9H6S0 1430 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 KIF20BQ96Q89 1820 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 NEXNQ0ZGT2 675 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 SAMD1Q6SPF0 538 aaPredicted RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 UNC13BO14795 1591 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 PLA2R1Q13018 1463 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 COL17A1Q9UMD9 1497 aaPredicted RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 H0YIN7 160 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 THRAP3Q9Y2W1 955 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC61Q9Y6R9 512 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 LRRC7Q96NW7 1537 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 HSPA5P11021 654 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 FLAD1Q8NFF5 587 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 TSPYL4Q9UJ04 414 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 ABT1Q9ULW3 272 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 NKTRP30414 1462 aaKnown RBP3.71□□□□□ -1.82
NEDD4-208ENST00000508342 ALKQ9UM73 1620 aa3.71□□□□□ -1.82
NEDD4-208ENST00000508342 SETDB2Q96T68 719 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 GPBP1L1Q9HC44 474 aaPredicted RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 EIF6P56537 245 aaKnown RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 ZMYND15Q9H091 742 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 PANK3Q9H999 370 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 ASXL1Q8IXJ9 1541 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 PPLO60437 1756 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 DEPDC5O75140 1603 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 MIER1Q8N108 512 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 GAS2L2Q8NHY3 880 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 L3MBTL2Q969R5 705 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 TTC21AQ8NDW8 1320 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 PTCD1O75127 700 aaKnown RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 SLC4A10Q6U841 1118 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 RBM17Q96I25 401 aaKnown RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 EZH2Q15910 746 aaKnown RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 RRP7AQ9Y3A4 280 aaKnown RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 GRIN3BO60391 1043 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 NF2P35240 595 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 IFNLR1Q8IU57 520 aaPredicted RBP3.7□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC146Q8IYE0 955 aa3.7□□□□□ -1.82
NEDD4-208ENST00000508342 TNS3Q68CZ2 1445 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 REREQ9P2R6 1566 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 RGPD8O14715 1765 aaPredicted RBP3.69□□□□□ -1.82
NEDD4-208ENST00000508342 CHMP4BQ9H444 224 aaKnown RBP3.69□□□□□ -1.82
NEDD4-208ENST00000508342 STRCQ7RTU9 1775 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC27Q2M243 656 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 JDP2Q8WYK2 163 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 DDRGK1Q96HY6 314 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 NYXQ9GZU5 481 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 CHD2O14647 1828 aaKnown RBP3.69□□□□□ -1.82
NEDD4-208ENST00000508342 RGPD1P0DJD0 1748 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 MYO1BO43795 1136 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 AMOTQ4VCS5 1084 aa3.69□□□□□ -1.82
NEDD4-208ENST00000508342 BIN2Q9UBW5 565 aaPredicted RBP3.69□□□□□ -1.82
NEDD4-208ENST00000508342 PRDM15P57071 1507 aaPredicted RBP3.69□□□□□ -1.82
NEDD4-208ENST00000508342 NBPF6Q5VWK0 638 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 NBPF5PQ86XG9 351 aaPredicted RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 NBPF4Q96M43 638 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 MRS2Q9HD23 443 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 FYB1O15117 783 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 COL14A1Q05707 1796 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 MED14O60244 1454 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 GNAT3A8MTJ3 354 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 VPS53Q5VIR6 699 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 NME9Q86XW9 330 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 IFNL2Q8IZJ0 200 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 ZNF428Q96B54 188 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 GPATCH3Q96I76 525 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 C14orf93Q9H972 538 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 KDM2BQ8NHM5 1336 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 APBB1O00213 710 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 RBM26Q5T8P6 1007 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 CNNM1Q9NRU3 951 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 TCEAL9Q9UHQ7 104 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 GNL2Q13823 731 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 DALRD3Q5D0E6 543 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 TRIM44Q96DX7 344 aaPredicted RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 RYDENQ9NUL5 291 aaKnown RBP3.68□□□□□ -1.82
NEDD4-208ENST00000508342 HDAC9Q9UKV0 1011 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 NSD3Q9BZ95 1437 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 PIK3R4Q99570 1358 aa3.68□□□□□ -1.82
NEDD4-208ENST00000508342 PDE6BP35913 854 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 HNRNPUQ00839 825 aaKnown RBP eCLIP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 VPS72Q15906 364 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 SIRT1Q96EB6 747 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 IQSEC2Q5JU85 1478 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 ANO8Q9HCE9 1232 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms