RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 LMTK2Q8IWU2 1503 aa9.08□□□□□ -0.96
SF3B1-209ENST00000479532 RAB3GAP2Q9H2M9 1393 aa9.08□□□□□ -0.96
SF3B1-209ENST00000479532 VWDEQ8N2E2 1590 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 TET3O43151 1660 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 C3P01024 1663 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 LCE2CQ5TA81 110 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 ATP13A2Q9NQ11 1180 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 PTPRMP28827 1452 aa9.07□□□□□ -0.96
SF3B1-209ENST00000479532 FCHSD2O94868 740 aa9.06□□□□□ -0.96
SF3B1-209ENST00000479532 PDE4DQ08499 809 aa9.06□□□□□ -0.96
SF3B1-209ENST00000479532 ZSCAN1Q8NBB4 408 aa9.06□□□□□ -0.96
SF3B1-209ENST00000479532 ZMYM3Q14202 1370 aa9.06□□□□□ -0.96
SF3B1-209ENST00000479532 MINK1Q8N4C8 1332 aaPredicted RBP9.05□□□□□ -0.96
SF3B1-209ENST00000479532 EFCAB6Q5THR3 1501 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 PZPP20742 1482 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 GNPATO15228 680 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 CFHP08603 1231 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 MAP2K5Q13163 448 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 HIC1Q14526 733 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 CCDC102AQ96A19 550 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 PCGF6Q9BYE7 350 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 KDM4CQ9H3R0 1056 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 ARHGAP31Q2M1Z3 1444 aa9.05□□□□□ -0.96
SF3B1-209ENST00000479532 RPRD2Q5VT52 1461 aaKnown RBP9.04□□□□□ -0.96
SF3B1-209ENST00000479532 DNAJB2P25686 324 aa9.04□□□□□ -0.96
SF3B1-209ENST00000479532 TRIM47Q96LD4 638 aa9.04□□□□□ -0.96
SF3B1-209ENST00000479532 NPDC1Q9NQX5 325 aaPredicted RBP9.04□□□□□ -0.96
SF3B1-209ENST00000479532 FECHP22830 423 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 SCUBE3Q8IX30 993 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 SPSB2Q99619 263 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 NPATQ14207 1427 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 E9PCH4 1651 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 PREX1Q8TCU6 1659 aa9.03□□□□□ -0.96
SF3B1-209ENST00000479532 CFAP65Q6ZU64 1925 aaKnown RBP9.03□□□□□ -0.96
SF3B1-209ENST00000479532 IRF6O14896 467 aa9.02□□□□□ -0.97
SF3B1-209ENST00000479532 PTGDRQ13258 359 aa9.02□□□□□ -0.97
SF3B1-209ENST00000479532 KIFC2Q96AC6 838 aa9.02□□□□□ -0.97
SF3B1-209ENST00000479532 SETD1BQ9UPS6 1966 aaKnown RBP9.02□□□□□ -0.97
SF3B1-209ENST00000479532 CEBPAP49715 358 aaPredicted RBP9.01□□□□□ -0.97
SF3B1-209ENST00000479532 SPHKAPQ2M3C7 1700 aa9.01□□□□□ -0.97
SF3B1-209ENST00000479532 SPATA31D1Q6ZQQ2 1576 aa9.01□□□□□ -0.97
SF3B1-209ENST00000479532 MPHOSPH9Q99550 1183 aa9.01□□□□□ -0.97
SF3B1-209ENST00000479532 ERVK-7P63135 1459 aa9.01□□□□□ -0.97
SF3B1-209ENST00000479532 TNRQ92752 1358 aa9□□□□□ -0.97
SF3B1-209ENST00000479532 UHRF1BP1Q6BDS2 1440 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 MYO3AQ8NEV4 1616 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 GMPRP36959 345 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 ERICH6Q7L0X2 663 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 IL27Q8NEV9 243 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 RBM46Q8TBY0 533 aaKnown RBP8.99□□□□□ -0.97
SF3B1-209ENST00000479532 TMEM134Q9H6X4 195 aa8.99□□□□□ -0.97
SF3B1-209ENST00000479532 NLRP1Q9C000 1473 aa8.98□□□□□ -0.97
SF3B1-209ENST00000479532 ZBTB24O43167 697 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-209ENST00000479532 FCF1Q9Y324 198 aaKnown RBP8.98□□□□□ -0.97
SF3B1-209ENST00000479532 ZNF142P52746 1687 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-209ENST00000479532 NOS1P29475 1434 aa8.97□□□□□ -0.97
SF3B1-209ENST00000479532 TRPM2O94759 1503 aa8.97□□□□□ -0.97
SF3B1-209ENST00000479532 AMHR2Q16671 573 aa8.97□□□□□ -0.97
SF3B1-209ENST00000479532 FBXO31Q5XUX0 539 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-209ENST00000479532 SNIP1Q8TAD8 396 aaKnown RBP8.97□□□□□ -0.97
SF3B1-209ENST00000479532 IRF7Q92985 503 aa8.97□□□□□ -0.97
SF3B1-209ENST00000479532 SLC52A1Q9NWF4 448 aa8.97□□□□□ -0.97
SF3B1-209ENST00000479532 DAXXQ9UER7 740 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-209ENST00000479532 SYNMO15061 1565 aa8.96□□□□□ -0.97
SF3B1-209ENST00000479532 CEP170BQ9Y4F5 1589 aaPredicted RBP8.96□□□□□ -0.97
SF3B1-209ENST00000479532 C14orf37Q86TY3 774 aa8.96□□□□□ -0.98
SF3B1-209ENST00000479532 NXF1Q9UBU9 619 aaKnown RBP8.96□□□□□ -0.98
SF3B1-209ENST00000479532 KIF1BO60333 1816 aa8.96□□□□□ -0.98
SF3B1-209ENST00000479532 A2ML1A8K2U0 1454 aa8.96□□□□□ -0.98
SF3B1-209ENST00000479532 KDM5AP29375 1690 aaKnown RBP8.95□□□□□ -0.98
SF3B1-209ENST00000479532 SMPD1P17405 629 aa8.95□□□□□ -0.98
SF3B1-209ENST00000479532 PUS10Q3MIT2 529 aaKnown RBP8.95□□□□□ -0.98
SF3B1-209ENST00000479532 PARP9Q8IXQ6 854 aa8.95□□□□□ -0.98
SF3B1-209ENST00000479532 CCDC144AA2RUR9 1427 aa8.95□□□□□ -0.98
SF3B1-209ENST00000479532 PTPRTO14522 1441 aa8.95□□□□□ -0.98
SF3B1-209ENST00000479532 UGGT1Q9NYU2 1555 aa8.95□□□□□ -0.98
SF3B1-209ENST00000479532 PIK3C2BO00750 1634 aa8.94□□□□□ -0.98
SF3B1-209ENST00000479532 FAM117AQ9C073 453 aa8.94□□□□□ -0.98
SF3B1-209ENST00000479532 ADGRB3O60242 1522 aa8.94□□□□□ -0.98
SF3B1-209ENST00000479532 RCCD1A6NED2 376 aa8.93□□□□□ -0.98
SF3B1-209ENST00000479532 SLC10A3P09131 477 aa8.93□□□□□ -0.98
SF3B1-209ENST00000479532 TTLL12Q14166 644 aaPredicted RBP8.93□□□□□ -0.98
SF3B1-209ENST00000479532 THEMISQ8N1K5 641 aaPredicted RBP8.93□□□□□ -0.98
SF3B1-209ENST00000479532 CLTCL1P53675 1640 aa8.93□□□□□ -0.98
SF3B1-209ENST00000479532 UBR1Q8IWV7 1749 aa8.93□□□□□ -0.98
SF3B1-209ENST00000479532 DHX57Q6P158 1386 aaKnown RBP8.92□□□□□ -0.98
SF3B1-209ENST00000479532 IDI1Q13907 227 aa8.92□□□□□ -0.98
SF3B1-209ENST00000479532 LMTK3Q96Q04 1460 aa8.91□□□□□ -0.98
SF3B1-209ENST00000479532 LORP23490 312 aaPredicted RBP8.91□□□□□ -0.98
SF3B1-209ENST00000479532 TMEM131LA2VDJ0 1609 aa8.91□□□□□ -0.98
SF3B1-209ENST00000479532 ANKRD30BQ9BXX2 1392 aa8.9□□□□□ -0.98
SF3B1-209ENST00000479532 MYO5BQ9ULV0 1848 aa8.9□□□□□ -0.98
SF3B1-209ENST00000479532 J3QL48 77 aa8.9□□□□□ -0.98
SF3B1-209ENST00000479532 WNT7AO00755 349 aa8.9□□□□□ -0.98
SF3B1-209ENST00000479532 ZNF326Q5BKZ1 582 aaKnown RBP8.9□□□□□ -0.98
SF3B1-209ENST00000479532 EID1Q9Y6B2 187 aa8.9□□□□□ -0.98
SF3B1-209ENST00000479532 PLA2R1Q13018 1463 aa8.89□□□□□ -0.99
SF3B1-209ENST00000479532 POLR1AO95602 1720 aaPredicted RBP8.89□□□□□ -0.99
SF3B1-209ENST00000479532 CCER1Q8TC90 406 aaPredicted RBP8.89□□□□□ -0.99
SF3B1-209ENST00000479532 DDRGK1Q96HY6 314 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms