RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 ZBTB22O15209 634 aa10.72□□□□□ -0.69
HDAC9-219ENST00000461159 PLIN1O60240 522 aa10.72□□□□□ -0.69
HDAC9-219ENST00000461159 BRINP3Q76B58 766 aa10.72□□□□□ -0.69
HDAC9-219ENST00000461159 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
HDAC9-219ENST00000461159 CENPQQ7L2Z9 268 aaPredicted RBP10.72□□□□□ -0.69
HDAC9-219ENST00000461159 XIRP1Q702N8 1843 aaKnown RBP10.72□□□□□ -0.69
HDAC9-219ENST00000461159 PIK3C2AO00443 1686 aa10.72□□□□□ -0.69
HDAC9-219ENST00000461159 ZC3H6P61129 1189 aaKnown RBP10.72□□□□□ -0.69
HDAC9-219ENST00000461159 IRX3P78415 501 aaPredicted RBP10.72□□□□□ -0.69
HDAC9-219ENST00000461159 EIF4A2Q14240 407 aaKnown RBP10.71□□□□□ -0.69
HDAC9-219ENST00000461159 NFKBIBQ15653 356 aa10.71□□□□□ -0.69
HDAC9-219ENST00000461159 PRKAR2BP31323 418 aa10.71□□□□□ -0.7
HDAC9-219ENST00000461159 IL13P35225 146 aa10.71□□□□□ -0.7
HDAC9-219ENST00000461159 FAM193AP78312 1265 aa10.71□□□□□ -0.7
HDAC9-219ENST00000461159 PHACTR3Q96KR7 559 aa10.71□□□□□ -0.7
HDAC9-219ENST00000461159 PLEKHF1Q96S99 279 aa10.71□□□□□ -0.7
HDAC9-219ENST00000461159 TPM2P07951 284 aa10.7□□□□□ -0.7
HDAC9-219ENST00000461159 MCCP23508 829 aa10.7□□□□□ -0.7
HDAC9-219ENST00000461159 RUNDC1Q96C34 613 aa10.7□□□□□ -0.7
HDAC9-219ENST00000461159 GCP02774 474 aa10.7□□□□□ -0.7
HDAC9-219ENST00000461159 FAM161AQ3B820 660 aa10.7□□□□□ -0.7
HDAC9-219ENST00000461159 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.7□□□□□ -0.7
HDAC9-219ENST00000461159 RRAGDQ9NQL2 400 aaPredicted RBP10.7□□□□□ -0.7
HDAC9-219ENST00000461159 KDM2BQ8NHM5 1336 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 CLCN1P35523 988 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 SULT6B1Q6IMI4 303 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 USHBP1Q8N6Y0 703 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 ZNF622Q969S3 477 aaKnown RBP eCLIP10.69□□□□□ -0.7
HDAC9-219ENST00000461159 PEAK1Q9H792 1746 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 AATKQ6ZMQ8 1374 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 DUSP27Q5VZP5 1158 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 NGEFQ8N5V2 710 aa10.69□□□□□ -0.7
HDAC9-219ENST00000461159 MARF1Q9Y4F3 1742 aaKnown RBP10.68□□□□□ -0.7
HDAC9-219ENST00000461159 MAP7D2Q96T17 732 aa10.68□□□□□ -0.7
HDAC9-219ENST00000461159 PLCD4Q9BRC7 762 aa10.68□□□□□ -0.7
HDAC9-219ENST00000461159 USP31Q70CQ4 1352 aa10.68□□□□□ -0.7
HDAC9-219ENST00000461159 PIP4K2BP78356 416 aa10.68□□□□□ -0.7
HDAC9-219ENST00000461159 AXDND1Q5T1B0 1012 aaPredicted RBP10.68□□□□□ -0.7
HDAC9-219ENST00000461159 IQSEC2Q5JU85 1478 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 NPHP3Q7Z494 1330 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 MAPK8IP3Q9UPT6 1336 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 HOXC9P31274 260 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 GOLGA2Q08379 1002 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 CHRNA2Q15822 529 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 ZNF592Q92610 1267 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 THUMPD2Q9BTF0 503 aaKnown RBP10.67□□□□□ -0.7
HDAC9-219ENST00000461159 SLFN5Q08AF3 891 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 AXIN2Q9Y2T1 843 aa10.67□□□□□ -0.7
HDAC9-219ENST00000461159 PTMSP20962 102 aa10.66□□□□□ -0.7
HDAC9-219ENST00000461159 LRRC59Q96AG4 307 aaKnown RBP10.66□□□□□ -0.7
HDAC9-219ENST00000461159 CDK12Q9NYV4 1490 aaPredicted RBP10.66□□□□□ -0.7
HDAC9-219ENST00000461159 RIPK4P57078 832 aa10.66□□□□□ -0.7
HDAC9-219ENST00000461159 SKAP1Q86WV1 359 aa10.66□□□□□ -0.7
HDAC9-219ENST00000461159 EYA1Q99502 592 aa10.66□□□□□ -0.7
HDAC9-219ENST00000461159 DCCP43146 1447 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 FAM83GA6ND36 823 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 TMPOP42166 694 aaKnown RBP10.65□□□□□ -0.7
HDAC9-219ENST00000461159 DCTN1Q14203 1278 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 C20orf194Q5TEA3 1177 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 FRAT1Q92837 279 aaPredicted RBP10.65□□□□□ -0.7
HDAC9-219ENST00000461159 TRIM35Q9UPQ4 493 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 NCOA3Q9Y6Q9 1424 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 FLT4P35916 1363 aa10.65□□□□□ -0.7
HDAC9-219ENST00000461159 SLC4A3P48751 1232 aa10.65□□□□□ -0.71
HDAC9-219ENST00000461159 TRMT2AQ8IZ69 625 aaKnown RBP10.65□□□□□ -0.71
HDAC9-219ENST00000461159 HDAC5Q9UQL6 1122 aa10.65□□□□□ -0.71
HDAC9-219ENST00000461159 FCHSD2O94868 740 aa10.64□□□□□ -0.71
HDAC9-219ENST00000461159 PPP4R3BQ5MIZ7 849 aa10.64□□□□□ -0.71
HDAC9-219ENST00000461159 SBNO1A3KN83 1393 aa10.64□□□□□ -0.71
HDAC9-219ENST00000461159 C8orf34Q49A92 452 aa10.64□□□□□ -0.71
HDAC9-219ENST00000461159 TSR2Q969E8 191 aaKnown RBP10.63□□□□□ -0.71
HDAC9-219ENST00000461159 SPATA31A3Q5VYP0 1347 aa10.63□□□□□ -0.71
HDAC9-219ENST00000461159 PHF14O94880 888 aa10.63□□□□□ -0.71
HDAC9-219ENST00000461159 TAF3Q5VWG9 929 aa10.63□□□□□ -0.71
HDAC9-219ENST00000461159 ARHGEF25Q86VW2 580 aa10.63□□□□□ -0.71
HDAC9-219ENST00000461159 KCNH5Q8NCM2 988 aa10.63□□□□□ -0.71
HDAC9-219ENST00000461159 NBPF6Q5VWK0 638 aa10.62□□□□□ -0.71
HDAC9-219ENST00000461159 TMED8Q6PL24 325 aaPredicted RBP10.62□□□□□ -0.71
HDAC9-219ENST00000461159 NBPF4Q96M43 638 aa10.62□□□□□ -0.71
HDAC9-219ENST00000461159 VGLL3A8MV65 326 aa10.62□□□□□ -0.71
HDAC9-219ENST00000461159 PATL2C9JE40 543 aaKnown RBP10.62□□□□□ -0.71
HDAC9-219ENST00000461159 IP6K1Q92551 441 aa10.62□□□□□ -0.71
HDAC9-219ENST00000461159 DMTNQ08495 405 aa10.61□□□□□ -0.71
HDAC9-219ENST00000461159 KIF20AO95235 890 aa10.61□□□□□ -0.71
HDAC9-219ENST00000461159 PXDNQ92626 1479 aa10.61□□□□□ -0.71
HDAC9-219ENST00000461159 TRPM3Q9HCF6 1732 aaPredicted RBP10.61□□□□□ -0.71
HDAC9-219ENST00000461159 FAM43BQ6ZT52 329 aaPredicted RBP10.6□□□□□ -0.71
HDAC9-219ENST00000461159 LTN1O94822 1766 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 TNS3Q68CZ2 1445 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 KIAA0232Q92628 1395 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 SOS2Q07890 1332 aaPredicted RBP10.6□□□□□ -0.71
HDAC9-219ENST00000461159 E9PSI1 815 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 BCAR3O75815 825 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 PSEN1P49768 467 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 MCM10Q7L590 875 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 ANKRD24Q8TF21 1146 aa10.6□□□□□ -0.71
HDAC9-219ENST00000461159 ZHX1Q9UKY1 873 aaPredicted RBP10.6□□□□□ -0.71
HDAC9-219ENST00000461159 KIF1AQ12756 1690 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 LTBP4Q8N2S1 1624 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 MED1Q15648 1581 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms