RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 EXOSC9Q06265 439 aaKnown RBP14.81□□□□□ -0.04
SYNE2-207ENST00000458046 FTSJ3Q8IY81 847 aaKnown RBP14.81□□□□□ -0.04
SYNE2-207ENST00000458046 TULP4Q9NRJ4 1543 aa14.8□□□□□ -0.04
SYNE2-207ENST00000458046 ZKSCAN2Q63HK3 967 aa14.8□□□□□ -0.04
SYNE2-207ENST00000458046 ZC3H13Q5T200 1668 aaKnown RBP14.8□□□□□ -0.04
SYNE2-207ENST00000458046 TPD52L2O43399 206 aaKnown RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 MVPQ14764 893 aaKnown RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 DZIP1LQ8IYY4 767 aaKnown RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 SLKQ9H2G2 1235 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 SMC4Q9NTJ3 1288 aa14.79□□□□□ -0.04
SYNE2-207ENST00000458046 A0A1W2PP64 1363 aa14.79□□□□□ -0.04
SYNE2-207ENST00000458046 EVI5LQ96CN4 794 aa14.79□□□□□ -0.04
SYNE2-207ENST00000458046 CEP170BQ9Y4F5 1589 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 TMPOP42166 694 aaKnown RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 CHMP4BQ9H444 224 aaKnown RBP14.79□□□□□ -0.04
SYNE2-207ENST00000458046 PRAM1Q96QH2 718 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 PLEKHF1Q96S99 279 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 KIAA1522Q9P206 1035 aaPredicted RBP14.78□□□□□ -0.04
SYNE2-207ENST00000458046 POGKQ9P215 609 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 TRIM35Q9UPQ4 493 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 FYB1O15117 783 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 NSD2O96028 1365 aa14.78□□□□□ -0.04
SYNE2-207ENST00000458046 ANKRD62A6NC57 917 aa14.77□□□□□ -0.04
SYNE2-207ENST00000458046 BECN1Q14457 450 aa14.77□□□□□ -0.05
SYNE2-207ENST00000458046 SSH1Q8WYL5 1049 aa14.77□□□□□ -0.05
SYNE2-207ENST00000458046 UPF2Q9HAU5 1272 aaKnown RBP14.77□□□□□ -0.05
SYNE2-207ENST00000458046 FLIIQ13045 1269 aa14.76□□□□□ -0.05
SYNE2-207ENST00000458046 TRIM27P14373 513 aa14.76□□□□□ -0.05
SYNE2-207ENST00000458046 RIPK4P57078 832 aa14.76□□□□□ -0.05
SYNE2-207ENST00000458046 NEXMIFQ5QGS0 1516 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 FBLN1P23142 703 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 APBB1IPQ7Z5R6 666 aaPredicted RBP14.75□□□□□ -0.05
SYNE2-207ENST00000458046 ITPRIPQ8IWB1 547 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 NCKAP5LQ9HCH0 1330 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 MICAL1Q8TDZ2 1067 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 TERF2IPQ9NYB0 399 aa14.75□□□□□ -0.05
SYNE2-207ENST00000458046 NOB1Q9ULX3 412 aaKnown RBP14.75□□□□□ -0.05
SYNE2-207ENST00000458046 ABCC11Q96J66 1382 aa14.74□□□□□ -0.05
SYNE2-207ENST00000458046 RIOK3O14730 519 aaKnown RBP14.74□□□□□ -0.05
SYNE2-207ENST00000458046 SEMA3EO15041 775 aa14.74□□□□□ -0.05
SYNE2-207ENST00000458046 YY1P25490 414 aa14.74□□□□□ -0.05
SYNE2-207ENST00000458046 USP32Q8NFA0 1604 aa14.74□□□□□ -0.05
SYNE2-207ENST00000458046 FBXO31Q5XUX0 539 aaPredicted RBP14.74□□□□□ -0.05
SYNE2-207ENST00000458046 ATAD2Q6PL18 1390 aa14.74□□□□□ -0.05
SYNE2-207ENST00000458046 TBC1D32Q96NH3 1257 aa14.73□□□□□ -0.05
SYNE2-207ENST00000458046 ARHGEF28Q8N1W1 1705 aaKnown RBP14.73□□□□□ -0.05
SYNE2-207ENST00000458046 RNF25Q96BH1 459 aaPredicted RBP14.73□□□□□ -0.05
SYNE2-207ENST00000458046 CABP1Q9NZU7 370 aa14.73□□□□□ -0.05
SYNE2-207ENST00000458046 DIAPH1O60610 1272 aaKnown RBP14.72□□□□□ -0.05
SYNE2-207ENST00000458046 ATF7IPQ6VMQ6 1270 aa14.72□□□□□ -0.05
SYNE2-207ENST00000458046 CDK19Q9BWU1 502 aa14.72□□□□□ -0.05
SYNE2-207ENST00000458046 NLRP1Q9C000 1473 aa14.72□□□□□ -0.05
SYNE2-207ENST00000458046 CEBPAP49715 358 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-207ENST00000458046 CT47B1P0C2W7 299 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-207ENST00000458046 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.71□□□□□ -0.05
SYNE2-207ENST00000458046 TMEM57Q8N5G2 664 aa14.71□□□□□ -0.05
SYNE2-207ENST00000458046 TBC1D2Q9BYX2 928 aa14.71□□□□□ -0.05
SYNE2-207ENST00000458046 MED14O60244 1454 aa14.7□□□□□ -0.06
SYNE2-207ENST00000458046 HDGFL2Q7Z4V5 671 aaPredicted RBP14.7□□□□□ -0.06
SYNE2-207ENST00000458046 NME8Q8N427 588 aa14.7□□□□□ -0.06
SYNE2-207ENST00000458046 CCDC97Q96F63 343 aaPredicted RBP14.7□□□□□ -0.06
SYNE2-207ENST00000458046 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
SYNE2-207ENST00000458046 DDX19BQ9UMR2 479 aa14.7□□□□□ -0.06
SYNE2-207ENST00000458046 NWD1Q149M9 1564 aa14.7□□□□□ -0.06
SYNE2-207ENST00000458046 FOSBP53539 338 aa14.69□□□□□ -0.06
SYNE2-207ENST00000458046 RXRBP28702 533 aa14.69□□□□□ -0.06
SYNE2-207ENST00000458046 PIK3C2BO00750 1634 aa14.69□□□□□ -0.06
SYNE2-207ENST00000458046 JCADQ9P266 1359 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 ADGRB2O60241 1585 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 RAB11FIP3O75154 756 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 HDAC1Q13547 482 aaPredicted RBP14.68□□□□□ -0.06
SYNE2-207ENST00000458046 GIMAP6Q6P9H5 292 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 WAPLQ7Z5K2 1190 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 ANTXR1Q9H6X2 564 aa14.68□□□□□ -0.06
SYNE2-207ENST00000458046 VIRMAQ69YN4 1812 aaKnown RBP14.68□□□□□ -0.06
SYNE2-207ENST00000458046 ARHGAP31Q2M1Z3 1444 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 YTHDC2Q9H6S0 1430 aaKnown RBP14.67□□□□□ -0.06
SYNE2-207ENST00000458046 COL3A1P02461 1466 aaPredicted RBP14.67□□□□□ -0.06
SYNE2-207ENST00000458046 PTMAP06454 111 aaKnown RBP14.67□□□□□ -0.06
SYNE2-207ENST00000458046 POM121Q96HA1 1249 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 SERPINA10Q9UK55 444 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 SPATA31A6Q5VVP1 1343 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 CD163L1Q9NR16 1453 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 PLEKHG3A1L390 1219 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 CARNS1A5YM72 827 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 ZFYVE9O95405 1425 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 PRKAR2BP31323 418 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 DIP2CQ9Y2E4 1556 aa14.67□□□□□ -0.06
SYNE2-207ENST00000458046 IL16Q14005 1332 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 HMOX1P09601 288 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 C22orf23Q9BZE7 217 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 ZBTB40Q9NUA8 1239 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 A2ML1A8K2U0 1454 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 CADPS2Q86UW7 1296 aa14.66□□□□□ -0.06
SYNE2-207ENST00000458046 THUMPD2Q9BTF0 503 aaKnown RBP14.66□□□□□ -0.06
SYNE2-207ENST00000458046 PNNQ9H307 717 aaKnown RBP14.65□□□□□ -0.06
SYNE2-207ENST00000458046 TESPA1A2RU30 521 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-207ENST00000458046 IPO8O15397 1037 aaKnown RBP14.65□□□□□ -0.06
SYNE2-207ENST00000458046 STK24Q9Y6E0 443 aa14.65□□□□□ -0.06
SYNE2-207ENST00000458046 ZMYM3Q14202 1370 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms