RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 OVOS2A0A0J9YW53 1432 aa14□□□□□ -0.17
USP4-205ENST00000431357 OVOS2Q6IE36 1432 aa14□□□□□ -0.17
USP4-205ENST00000431357 NCKAP5LQ9HCH0 1330 aa14□□□□□ -0.17
USP4-205ENST00000431357 TNRQ92752 1358 aa13.99□□□□□ -0.17
USP4-205ENST00000431357 RABEP1Q15276 862 aa13.99□□□□□ -0.17
USP4-205ENST00000431357 TMEM2Q9UHN6 1383 aa13.99□□□□□ -0.17
USP4-205ENST00000431357 GSPT1P15170 499 aaKnown RBP13.99□□□□□ -0.17
USP4-205ENST00000431357 RGS12O14924 1447 aa13.98□□□□□ -0.17
USP4-205ENST00000431357 ATP10DQ9P241 1426 aa13.98□□□□□ -0.17
USP4-205ENST00000431357 USP31Q70CQ4 1352 aa13.98□□□□□ -0.17
USP4-205ENST00000431357 CEP85Q6P2H3 762 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 CASC1Q6TDU7 716 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 CLEC17AQ6ZS10 378 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 TOPAZ1Q8N9V7 1692 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 ROBO2Q9HCK4 1378 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 AEBP1Q8IUX7 1158 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 ZMYND15Q9H091 742 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 ACEP12821 1306 aa13.97□□□□□ -0.17
USP4-205ENST00000431357 USP6P35125 1406 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 GOLGA6L22H0YM25 854 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 GRPEL1Q9HAV7 217 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 NALCNQ8IZF0 1738 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 RTL1A6NKG5 1358 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 ARHGEF10O15013 1369 aa13.96□□□□□ -0.17
USP4-205ENST00000431357 RGPD1P0DJD0 1748 aa13.96□□□□□ -0.18
USP4-205ENST00000431357 HMMRO75330 724 aa13.96□□□□□ -0.18
USP4-205ENST00000431357 CRB1P82279 1406 aa13.95□□□□□ -0.18
USP4-205ENST00000431357 ADAMTS13Q76LX8 1427 aa13.95□□□□□ -0.18
USP4-205ENST00000431357 CD2BP2O95400 341 aaKnown RBP13.95□□□□□ -0.18
USP4-205ENST00000431357 USP26Q9BXU7 913 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 TTC21AQ8NDW8 1320 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 UBR1Q8IWV7 1749 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 PLEKHG1Q9ULL1 1385 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 MCM10Q7L590 875 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 GAS2L2Q8NHY3 880 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 RBM42Q9BTD8 480 aaKnown RBP13.94□□□□□ -0.18
USP4-205ENST00000431357 MSH6P52701 1360 aa13.94□□□□□ -0.18
USP4-205ENST00000431357 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.93□□□□□ -0.18
USP4-205ENST00000431357 CCT4P50991 539 aaKnown RBP13.93□□□□□ -0.18
USP4-205ENST00000431357 NUCB2P80303 420 aa13.93□□□□□ -0.18
USP4-205ENST00000431357 RRAGDQ9NQL2 400 aaPredicted RBP13.93□□□□□ -0.18
USP4-205ENST00000431357 HSP90AB2PQ58FF8 381 aa13.93□□□□□ -0.18
USP4-205ENST00000431357 RTF1Q92541 710 aaKnown RBP13.93□□□□□ -0.18
USP4-205ENST00000431357 SSH2Q76I76 1423 aa13.93□□□□□ -0.18
USP4-205ENST00000431357 PEAK1Q9H792 1746 aa13.92□□□□□ -0.18
USP4-205ENST00000431357 REC8O95072 547 aa13.92□□□□□ -0.18
USP4-205ENST00000431357 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
USP4-205ENST00000431357 KRT24Q2M2I5 525 aa13.92□□□□□ -0.18
USP4-205ENST00000431357 C16orf71Q8IYS4 520 aaPredicted RBP13.92□□□□□ -0.18
USP4-205ENST00000431357 PANK2Q9BZ23 570 aa13.92□□□□□ -0.18
USP4-205ENST00000431357 CWC22Q9HCG8 908 aaKnown RBP13.92□□□□□ -0.18
USP4-205ENST00000431357 SDSP20132 328 aa13.91□□□□□ -0.18
USP4-205ENST00000431357 ARXQ96QS3 562 aa13.91□□□□□ -0.18
USP4-205ENST00000431357 MEIS3Q99687 375 aa13.91□□□□□ -0.18
USP4-205ENST00000431357 OSBPL3Q9H4L5 887 aa13.91□□□□□ -0.18
USP4-205ENST00000431357 SBNO1A3KN83 1393 aa13.91□□□□□ -0.18
USP4-205ENST00000431357 HTATSF1O43719 755 aaKnown RBP13.91□□□□□ -0.18
USP4-205ENST00000431357 FLT4P35916 1363 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 ST18O60284 1047 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 SSFA2P28290 1259 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 CLCN1P35523 988 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 FOXD4L1Q9NU39 408 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 TSPYL4Q9UJ04 414 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 KDRP35968 1356 aa13.9□□□□□ -0.18
USP4-205ENST00000431357 IBTKQ9P2D0 1353 aaPredicted RBP13.9□□□□□ -0.18
USP4-205ENST00000431357 SOS1Q07889 1333 aaPredicted RBP13.89□□□□□ -0.19
USP4-205ENST00000431357 BAG4O95429 457 aaKnown RBP13.89□□□□□ -0.19
USP4-205ENST00000431357 KLHL40Q2TBA0 621 aa13.89□□□□□ -0.19
USP4-205ENST00000431357 MAP3K19Q56UN5 1328 aa13.89□□□□□ -0.19
USP4-205ENST00000431357 ERC2O15083 957 aa13.88□□□□□ -0.19
USP4-205ENST00000431357 MTHFSDQ2M296 383 aaKnown RBP13.88□□□□□ -0.19
USP4-205ENST00000431357 OTUD7AQ8TE49 926 aaPredicted RBP13.88□□□□□ -0.19
USP4-205ENST00000431357 GNAI2P04899 355 aa13.88□□□□□ -0.19
USP4-205ENST00000431357 SMARCA5O60264 1052 aaPredicted RBP13.87□□□□□ -0.19
USP4-205ENST00000431357 VSIG10Q8N0Z9 540 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 STK31Q9BXU1 1019 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 FMN2Q9NZ56 1722 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 CYP2E1P05181 493 aaPredicted RBP13.87□□□□□ -0.19
USP4-205ENST00000431357 EID1Q9Y6B2 187 aa13.87□□□□□ -0.19
USP4-205ENST00000431357 GNAI3P08754 354 aa13.86□□□□□ -0.19
USP4-205ENST00000431357 LTKP29376 864 aa13.86□□□□□ -0.19
USP4-205ENST00000431357 PDE1AP54750 535 aa13.86□□□□□ -0.19
USP4-205ENST00000431357 BABAM1Q9NWV8 329 aa13.86□□□□□ -0.19
USP4-205ENST00000431357 DDX49Q9Y6V7 483 aaKnown RBP13.86□□□□□ -0.19
USP4-205ENST00000431357 CCDC30Q5VVM6 783 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 GAS2L3Q86XJ1 694 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 AMPHP49418 695 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 SLC4A10Q6U841 1118 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 G2E3Q7L622 706 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 TRIM44Q96DX7 344 aaPredicted RBP13.85□□□□□ -0.19
USP4-205ENST00000431357 TBX22Q9Y458 520 aa13.85□□□□□ -0.19
USP4-205ENST00000431357 NUTM2FA1L443 756 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 APBB1O00213 710 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 MCM2P49736 904 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 EYA1Q99502 592 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 MIS18AQ9NYP9 233 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 FOXO3O43524 673 aa13.84□□□□□ -0.19
USP4-205ENST00000431357 NGDNQ8NEJ9 315 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms