RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CYP2E1P05181 493 aaPredicted RBP12.33□□□□□ -0.44
COL17A1-203ENST00000393211 HDGFP51858 240 aaKnown RBP12.33□□□□□ -0.44
COL17A1-203ENST00000393211 GAS2L3Q86XJ1 694 aa12.33□□□□□ -0.44
COL17A1-203ENST00000393211 ANP32BQ92688 251 aaKnown RBP12.33□□□□□ -0.44
COL17A1-203ENST00000393211 NUDT16Q96DE0 195 aaKnown RBP12.33□□□□□ -0.44
COL17A1-203ENST00000393211 ARXQ96QS3 562 aa12.33□□□□□ -0.44
COL17A1-203ENST00000393211 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
COL17A1-203ENST00000393211 ST18O60284 1047 aa12.32□□□□□ -0.44
COL17A1-203ENST00000393211 REC8O95072 547 aa12.32□□□□□ -0.44
COL17A1-203ENST00000393211 SSFA2P28290 1259 aa12.32□□□□□ -0.44
COL17A1-203ENST00000393211 ZNF445P59923 1031 aa12.32□□□□□ -0.44
COL17A1-203ENST00000393211 HMMRO75330 724 aa12.31□□□□□ -0.44
COL17A1-203ENST00000393211 FBLN1P23142 703 aa12.31□□□□□ -0.44
COL17A1-203ENST00000393211 CEP85Q6P2H3 762 aa12.31□□□□□ -0.44
COL17A1-203ENST00000393211 RBM42Q9BTD8 480 aaKnown RBP12.31□□□□□ -0.44
COL17A1-203ENST00000393211 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
COL17A1-203ENST00000393211 RTL1A6NKG5 1358 aa12.3□□□□□ -0.44
COL17A1-203ENST00000393211 HS1BP3Q53T59 392 aa12.3□□□□□ -0.44
COL17A1-203ENST00000393211 NAP1L5Q96NT1 182 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-203ENST00000393211 DDX49Q9Y6V7 483 aaKnown RBP12.3□□□□□ -0.44
COL17A1-203ENST00000393211 RGPD1P0DJD0 1748 aa12.3□□□□□ -0.44
COL17A1-203ENST00000393211 TTC21BQ7Z4L5 1316 aa12.29□□□□□ -0.44
COL17A1-203ENST00000393211 NALCNQ8IZF0 1738 aa12.29□□□□□ -0.44
COL17A1-203ENST00000393211 NASPP49321 788 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-203ENST00000393211 MCM2P49736 904 aa12.29□□□□□ -0.44
COL17A1-203ENST00000393211 ARHGEF10O15013 1369 aa12.28□□□□□ -0.44
COL17A1-203ENST00000393211 METP08581 1390 aa12.28□□□□□ -0.44
COL17A1-203ENST00000393211 FAM83GA6ND36 823 aa12.28□□□□□ -0.44
COL17A1-203ENST00000393211 SDSP20132 328 aa12.28□□□□□ -0.44
COL17A1-203ENST00000393211 TOPAZ1Q8N9V7 1692 aa12.27□□□□□ -0.44
COL17A1-203ENST00000393211 OVOS2A0A0J9YW53 1432 aa12.27□□□□□ -0.44
COL17A1-203ENST00000393211 ERC2O15083 957 aa12.27□□□□□ -0.44
COL17A1-203ENST00000393211 CCT4P50991 539 aaKnown RBP12.27□□□□□ -0.44
COL17A1-203ENST00000393211 EIF4A2Q14240 407 aaKnown RBP12.27□□□□□ -0.44
COL17A1-203ENST00000393211 RRS1Q15050 365 aaKnown RBP12.27□□□□□ -0.44
COL17A1-203ENST00000393211 OVOS2Q6IE36 1432 aa12.27□□□□□ -0.44
COL17A1-203ENST00000393211 FOXD4L1Q9NU39 408 aa12.27□□□□□ -0.44
COL17A1-203ENST00000393211 MSH6P52701 1360 aa12.27□□□□□ -0.45
COL17A1-203ENST00000393211 CRB1P82279 1406 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 EPB41L2O43491 1005 aaKnown RBP12.26□□□□□ -0.45
COL17A1-203ENST00000393211 RRP9O43818 475 aaKnown RBP12.26□□□□□ -0.45
COL17A1-203ENST00000393211 TPM2P07951 284 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 PLPPR3Q6T4P5 718 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 ZSCAN30Q86W11 494 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 LMBRD1Q9NUN5 540 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 ZRANB1Q9UGI0 708 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 SOS1Q07889 1333 aaPredicted RBP12.26□□□□□ -0.45
COL17A1-203ENST00000393211 USP31Q70CQ4 1352 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 PLEKHG3A1L390 1219 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 TERF1P54274 439 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 SULT6B1Q6IMI4 303 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 IL17RAQ96F46 866 aa12.26□□□□□ -0.45
COL17A1-203ENST00000393211 ERBB4Q15303 1308 aa12.25□□□□□ -0.45
COL17A1-203ENST00000393211 DCTN1Q14203 1278 aa12.25□□□□□ -0.45
COL17A1-203ENST00000393211 GLIPR1L2Q4G1C9 344 aa12.25□□□□□ -0.45
COL17A1-203ENST00000393211 MCTP1Q6DN14 999 aa12.25□□□□□ -0.45
COL17A1-203ENST00000393211 C16orf71Q8IYS4 520 aaPredicted RBP12.25□□□□□ -0.45
COL17A1-203ENST00000393211 SSH2Q76I76 1423 aa12.24□□□□□ -0.45
COL17A1-203ENST00000393211 ANAPC15P60006 121 aa12.24□□□□□ -0.45
COL17A1-203ENST00000393211 TXNDC2Q86VQ3 553 aa12.24□□□□□ -0.45
COL17A1-203ENST00000393211 DIP2BQ9P265 1576 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 HTATSF1O43719 755 aaKnown RBP12.23□□□□□ -0.45
COL17A1-203ENST00000393211 PDE1AP54750 535 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 ZSCAN23Q3MJ62 389 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 MEIS3Q99687 375 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 PRR36Q9H6K5 1346 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 PEAK1Q9H792 1746 aa12.23□□□□□ -0.45
COL17A1-203ENST00000393211 N4BP2Q86UW6 1770 aaPredicted RBP12.22□□□□□ -0.45
COL17A1-203ENST00000393211 MBD3O95983 291 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 SLC4A2P04920 1241 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 MCCP23508 829 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 INTS4Q96HW7 963 aaKnown RBP12.22□□□□□ -0.45
COL17A1-203ENST00000393211 PDLIM2Q96JY6 352 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 SRCIN1Q9C0H9 1055 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 TUBGCP6Q96RT7 1819 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 CACNA1FO60840 1977 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 USP6P35125 1406 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 FMN2Q9NZ56 1722 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 GNAI2P04899 355 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 GNAI3P08754 354 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 MCM5P33992 734 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 AEBP1Q8IUX7 1158 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 OTUD7AQ8TE49 926 aaPredicted RBP12.22□□□□□ -0.45
COL17A1-203ENST00000393211 AOX1Q06278 1338 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 TTC21AQ8NDW8 1320 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 SALL3Q9BXA9 1300 aa12.22□□□□□ -0.45
COL17A1-203ENST00000393211 OFD1O75665 1012 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 MSNP26038 577 aaKnown RBP12.21□□□□□ -0.46
COL17A1-203ENST00000393211 CUL4AQ13619 759 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 CAVIN1Q6NZI2 390 aaKnown RBP12.21□□□□□ -0.46
COL17A1-203ENST00000393211 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.21□□□□□ -0.46
COL17A1-203ENST00000393211 MCM10Q7L590 875 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 BABAM1Q9NWV8 329 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 KDRP35968 1356 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 AK9Q5TCS8 1911 aa12.21□□□□□ -0.46
COL17A1-203ENST00000393211 PXDNLA1KZ92 1463 aa12.2□□□□□ -0.46
COL17A1-203ENST00000393211 SMARCA5O60264 1052 aaPredicted RBP12.2□□□□□ -0.46
COL17A1-203ENST00000393211 KLHL34Q8N239 644 aa12.2□□□□□ -0.46
COL17A1-203ENST00000393211 RTF1Q92541 710 aaKnown RBP12.2□□□□□ -0.46
COL17A1-203ENST00000393211 STAP2Q9UGK3 403 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms