RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 ABCC4O15439 1325 aa20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 GSPT1P15170 499 aaKnown RBP20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 PLEKHG3A1L390 1219 aa20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 RAB3GAP1Q15042 981 aa20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 LMOD2Q6P5Q4 547 aa20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 GAS2L2Q8NHY3 880 aa20.21■□□□□ 0.83
NKX3-1-201ENST00000380871 PLEKHG1Q9ULL1 1385 aa20.2■□□□□ 0.82
NKX3-1-201ENST00000380871 MRE11P49959 708 aa20.2■□□□□ 0.82
NKX3-1-201ENST00000380871 PIK3R4Q99570 1358 aa20.2■□□□□ 0.82
NKX3-1-201ENST00000380871 C16orf71Q8IYS4 520 aaPredicted RBP20.2■□□□□ 0.82
NKX3-1-201ENST00000380871 ZNF853P0CG23 659 aa20.19■□□□□ 0.82
NKX3-1-201ENST00000380871 ABTB2Q8N961 1025 aa20.19■□□□□ 0.82
NKX3-1-201ENST00000380871 SSFA2P28290 1259 aa20.19■□□□□ 0.82
NKX3-1-201ENST00000380871 USHBP1Q8N6Y0 703 aa20.19■□□□□ 0.82
NKX3-1-201ENST00000380871 RTF1Q92541 710 aaKnown RBP20.19■□□□□ 0.82
NKX3-1-201ENST00000380871 AATKQ6ZMQ8 1374 aa20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 K7ELQ4 463 aaPredicted RBP20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 ARHGAP45Q92619 1136 aa20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 ZNF428Q96B54 188 aa20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 SETD1AO15047 1707 aaKnown RBP20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 XPCQ01831 940 aaPredicted RBP20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 SLC4A10Q6U841 1118 aa20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 OTUD7AQ8TE49 926 aaPredicted RBP20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 TBX22Q9Y458 520 aa20.18■□□□□ 0.82
NKX3-1-201ENST00000380871 MTHFSDQ2M296 383 aaKnown RBP20.17■□□□□ 0.82
NKX3-1-201ENST00000380871 ERBB4Q15303 1308 aa20.16■□□□□ 0.82
NKX3-1-201ENST00000380871 CDK12Q9NYV4 1490 aaPredicted RBP20.16■□□□□ 0.82
NKX3-1-201ENST00000380871 KNDC1Q76NI1 1749 aa20.16■□□□□ 0.82
NKX3-1-201ENST00000380871 USP6P35125 1406 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 TECPR2O15040 1411 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 PLEKHM2Q8IWE5 1019 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 GBP4Q96PP9 640 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 EYA1Q99502 592 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 TSPYL4Q9UJ04 414 aa20.15■□□□□ 0.82
NKX3-1-201ENST00000380871 CIZ1Q9ULV3 898 aaPredicted RBP20.14■□□□□ 0.82
NKX3-1-201ENST00000380871 AK9Q5TCS8 1911 aa20.14■□□□□ 0.81
NKX3-1-201ENST00000380871 CDC45O75419 566 aa20.14■□□□□ 0.81
NKX3-1-201ENST00000380871 DLG5Q8TDM6 1919 aa20.14■□□□□ 0.81
NKX3-1-201ENST00000380871 SLC4A2P04920 1241 aa20.13■□□□□ 0.81
NKX3-1-201ENST00000380871 F6X3S4 739 aa20.13■□□□□ 0.81
NKX3-1-201ENST00000380871 NAP1L5Q96NT1 182 aaPredicted RBP20.13■□□□□ 0.81
NKX3-1-201ENST00000380871 SMARCA5O60264 1052 aaPredicted RBP20.12■□□□□ 0.81
NKX3-1-201ENST00000380871 UBR1Q8IWV7 1749 aa20.12■□□□□ 0.81
NKX3-1-201ENST00000380871 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.12■□□□□ 0.81
NKX3-1-201ENST00000380871 API5Q9BZZ5 524 aaKnown RBP20.12■□□□□ 0.81
NKX3-1-201ENST00000380871 CLCN1P35523 988 aa20.11■□□□□ 0.81
NKX3-1-201ENST00000380871 ESCO1Q5FWF5 840 aa20.11■□□□□ 0.81
NKX3-1-201ENST00000380871 CHMP4BQ9H444 224 aaKnown RBP20.1■□□□□ 0.81
NKX3-1-201ENST00000380871 PKP1Q13835 747 aa20.1■□□□□ 0.81
NKX3-1-201ENST00000380871 G2E3Q7L622 706 aa20.09■□□□□ 0.81
NKX3-1-201ENST00000380871 TTC22Q5TAA0 569 aa20.08■□□□□ 0.81
NKX3-1-201ENST00000380871 DCTPP1Q9H773 170 aa20.08■□□□□ 0.81
NKX3-1-201ENST00000380871 CHL1O00533 1208 aa20.08■□□□□ 0.81
NKX3-1-201ENST00000380871 PSME1Q06323 249 aa20.07■□□□□ 0.8
NKX3-1-201ENST00000380871 ATP10DQ9P241 1426 aa20.07■□□□□ 0.8
NKX3-1-201ENST00000380871 ESPNB1AK53 854 aa20.07■□□□□ 0.8
NKX3-1-201ENST00000380871 BAG4O95429 457 aaKnown RBP20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 MSH6P52701 1360 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 ANKLE2Q86XL3 938 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 MEIS3Q99687 375 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 OVOS2A0A0J9YW53 1432 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 RGS12O14924 1447 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 OVOS2Q6IE36 1432 aa20.06■□□□□ 0.8
NKX3-1-201ENST00000380871 CHAMP1Q96JM3 812 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 PHF8Q9UPP1 1060 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 TTC21AQ8NDW8 1320 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 SDSP20132 328 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 CEP85Q6P2H3 762 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 USP26Q9BXU7 913 aa20.05■□□□□ 0.8
NKX3-1-201ENST00000380871 DDX49Q9Y6V7 483 aaKnown RBP20.04■□□□□ 0.8
NKX3-1-201ENST00000380871 INTS3Q68E01 1043 aaKnown RBP20.04■□□□□ 0.8
NKX3-1-201ENST00000380871 HOXC9P31274 260 aa20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 MCTP1Q6DN14 999 aa20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 ANKRD44Q8N8A2 993 aa20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 FLT4P35916 1363 aa20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 SKOR2Q2VWA4 1001 aaPredicted RBP20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 ZGPATQ8N5A5 531 aaKnown RBP20.03■□□□□ 0.8
NKX3-1-201ENST00000380871 ITSN1Q15811 1721 aa20.02■□□□□ 0.8
NKX3-1-201ENST00000380871 TRIM44Q96DX7 344 aaPredicted RBP20.02■□□□□ 0.8
NKX3-1-201ENST00000380871 ISY1Q9ULR0 285 aaKnown RBP20.02■□□□□ 0.8
NKX3-1-201ENST00000380871 EIF2S2P20042 333 aaKnown RBP20.01■□□□□ 0.79
NKX3-1-201ENST00000380871 RABEP1Q15276 862 aa20.01■□□□□ 0.79
NKX3-1-201ENST00000380871 TSHZ3Q63HK5 1081 aa20.01■□□□□ 0.79
NKX3-1-201ENST00000380871 RTL1A6NKG5 1358 aa20■□□□□ 0.79
NKX3-1-201ENST00000380871 NCLP19338 710 aaKnown RBP20■□□□□ 0.79
NKX3-1-201ENST00000380871 FKBP5Q13451 457 aaPredicted RBP20■□□□□ 0.79
NKX3-1-201ENST00000380871 LRRC59Q96AG4 307 aaKnown RBP20■□□□□ 0.79
NKX3-1-201ENST00000380871 SBNO1A3KN83 1393 aa20■□□□□ 0.79
NKX3-1-201ENST00000380871 ORAI2Q96SN7 254 aa20■□□□□ 0.79
NKX3-1-201ENST00000380871 STK31Q9BXU1 1019 aa20■□□□□ 0.79
NKX3-1-201ENST00000380871 MON2Q7Z3U7 1717 aa20■□□□□ 0.79
NKX3-1-201ENST00000380871 C3P01024 1663 aa19.99■□□□□ 0.79
NKX3-1-201ENST00000380871 GOLGA6L22H0YM25 854 aa19.99■□□□□ 0.79
NKX3-1-201ENST00000380871 GNAT3A8MTJ3 354 aa19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 NASPP49321 788 aaPredicted RBP19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 CAVIN1Q6NZI2 390 aaKnown RBP19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 USP31Q70CQ4 1352 aa19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 KLHL40Q2TBA0 621 aa19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 SETD1BQ9UPS6 1966 aaKnown RBP19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 FOXD4L5Q5VV16 416 aaPredicted RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms